Cluster: HRGMv2_4626_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_57 | HRGMv2_4626_57_2 | 1301 | 2314 | - | GT2 |
| TC | HRGMv2_4626_57 | HRGMv2_4626_57_3 | 2794 | 3618 | - | 2.A.108.2.3 |
| TC | HRGMv2_4626_57 | HRGMv2_4626_57_4 | 3645 | 4955 | - | 2.A.108.2.3 |
| TC | HRGMv2_4626_57 | HRGMv2_4626_57_5 | 4973 | 6166 | - | 2.A.108.2.3 |
| TC | HRGMv2_4626_57 | HRGMv2_4626_57_6 | 6175 | 7017 | - | 2.A.108.2.3 |
Gene ID: HRGMv2_4626_57_2
Type: CAZyme
Location: 1301 - 2314 (-)
Type: CAZyme
Location: 1301 - 2314 (-)
Gene ID: HRGMv2_4626_57_3
Type: TC
Location: 2794 - 3618 (-)
Type: TC
Location: 2794 - 3618 (-)
Gene ID: HRGMv2_4626_57_4
Type: TC
Location: 3645 - 4955 (-)
Type: TC
Location: 3645 - 4955 (-)
Gene ID: HRGMv2_4626_57_5
Type: TC
Location: 4973 - 6166 (-)
Type: TC
Location: 4973 - 6166 (-)
Gene ID: HRGMv2_4626_57_6
Type: TC
Location: 6175 - 7017 (-)
Type: TC
Location: 6175 - 7017 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.