Cluster: HRGMv2_4626_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_05744
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_45 | HRGMv2_4626_45_3 | 650 | 2026 | - | AA1 |
| TC | HRGMv2_4626_45 | HRGMv2_4626_45_4 | 2262 | 2537 | - | 4.A.1.1.15 |
| TC | HRGMv2_4626_45 | HRGMv2_4626_45_5 | 2540 | 5065 | - | 4.A.1.1.15 |
| TC | HRGMv2_4626_45 | HRGMv2_4626_45_6 | 5125 | 6348 | - | 1.B.3.1.1 |
| CAZyme | HRGMv2_4626_45 | HRGMv2_4626_45_7 | 6491 | 8137 | - | GH13_29 |
| TC | HRGMv2_4626_45 | HRGMv2_4626_45_8 | 8258 | 9700 | - | 4.A.1.2.8 |
Gene ID: HRGMv2_4626_45_3
Type: CAZyme
Location: 650 - 2026 (-)
Type: CAZyme
Location: 650 - 2026 (-)
Gene ID: HRGMv2_4626_45_4
Type: TC
Location: 2262 - 2537 (-)
Type: TC
Location: 2262 - 2537 (-)
Gene ID: HRGMv2_4626_45_5
Type: TC
Location: 2540 - 5065 (-)
Type: TC
Location: 2540 - 5065 (-)
Gene ID: HRGMv2_4626_45_6
Type: TC
Location: 5125 - 6348 (-)
Type: TC
Location: 5125 - 6348 (-)
Gene ID: HRGMv2_4626_45_7
Type: CAZyme
Location: 6491 - 8137 (-)
Type: CAZyme
Location: 6491 - 8137 (-)
Gene ID: HRGMv2_4626_45_8
Type: TC
Location: 8258 - 9700 (-)
Type: TC
Location: 8258 - 9700 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.