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Cluster: HRGMv2_4626_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4626_1 HRGMv2_4626_1_144 164991 166853 + AA1
NULL(UNKNOWN) HRGMv2_4626_1 HRGMv2_4626_1_145 166866 167114 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4626_1 HRGMv2_4626_1_146 167086 168186 + 1.B.76.1.6
NULL(UNKNOWN) HRGMv2_4626_1 HRGMv2_4626_1_147 168513 168956 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4626_1 HRGMv2_4626_1_148 168979 169446 + DUF411
TC HRGMv2_4626_1 HRGMv2_4626_1_149 170355 170612 - 2.A.1.59.2
pfam HRGMv2_4626_1 HRGMv2_4626_1_150 171403 172659 + OEP | OEP
TC HRGMv2_4626_1 HRGMv2_4626_1_151 172656 174131 + 2.A.6.1.4
TC HRGMv2_4626_1 HRGMv2_4626_1_152 174128 177286 + 2.A.6.1.4
pfam HRGMv2_4626_1 HRGMv2_4626_1_153 177559 177852 + IstB_IS21
TC HRGMv2_4626_1 HRGMv2_4626_1_154 178448 179524 - 1.B.25.1.32
Gene ID: HRGMv2_4626_1_144
Type: CAZyme
Location: 164991 - 166853 (+)
Gene ID: HRGMv2_4626_1_145
Type:
Location: 166866 - 167114 (+)
Gene ID: HRGMv2_4626_1_146
Type: TC
Location: 167086 - 168186 (+)
Gene ID: HRGMv2_4626_1_147
Type:
Location: 168513 - 168956 (-)
Gene ID: HRGMv2_4626_1_148
Type: pfam
Location: 168979 - 169446 (+)
Gene ID: HRGMv2_4626_1_149
Type: TC
Location: 170355 - 170612 (-)
Gene ID: HRGMv2_4626_1_150
Type: pfam
Location: 171403 - 172659 (+)
Gene ID: HRGMv2_4626_1_151
Type: TC
Location: 172656 - 174131 (+)
Gene ID: HRGMv2_4626_1_152
Type: TC
Location: 174128 - 177286 (+)
Gene ID: HRGMv2_4626_1_153
Type: pfam
Location: 177559 - 177852 (+)
Gene ID: HRGMv2_4626_1_154
Type: TC
Location: 178448 - 179524 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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