Cluster: HRGMv2_4626_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_34 | HRGMv2_4626_34_25 | 27509 | 30109 | + | GT2 |
| TC | HRGMv2_4626_34 | HRGMv2_4626_34_26 | 30106 | 32433 | + | 4.D.3.1.6 |
| CAZyme | HRGMv2_4626_34 | HRGMv2_4626_34_27 | 32438 | 33550 | + | GH8 |
| TC | HRGMv2_4626_34 | HRGMv2_4626_34_28 | 33538 | 37068 | + | 1.B.55.3.1 |
Gene ID: HRGMv2_4626_34_25
Type: CAZyme
Location: 27509 - 30109 (+)
Type: CAZyme
Location: 27509 - 30109 (+)
Gene ID: HRGMv2_4626_34_26
Type: TC
Location: 30106 - 32433 (+)
Type: TC
Location: 30106 - 32433 (+)
Gene ID: HRGMv2_4626_34_27
Type: CAZyme
Location: 32438 - 33550 (+)
Type: CAZyme
Location: 32438 - 33550 (+)
Gene ID: HRGMv2_4626_34_28
Type: TC
Location: 33538 - 37068 (+)
Type: TC
Location: 33538 - 37068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.