Cluster: HRGMv2_4626_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_03893
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_26 | HRGMv2_4626_26_23 | 23508 | 24662 | + | GH102 |
| pfam | HRGMv2_4626_26 | HRGMv2_4626_26_24 | 24798 | 25184 | - | MAPEG |
| TC | HRGMv2_4626_26 | HRGMv2_4626_26_25 | 25198 | 26031 | - | 2.A.7.31.3 |
| TC | HRGMv2_4626_26 | HRGMv2_4626_26_26 | 26231 | 27490 | + | 2.A.36.6.8 |
Gene ID: HRGMv2_4626_26_23
Type: CAZyme
Location: 23508 - 24662 (+)
Type: CAZyme
Location: 23508 - 24662 (+)
Gene ID: HRGMv2_4626_26_24
Type: pfam
Location: 24798 - 25184 (-)
Type: pfam
Location: 24798 - 25184 (-)
Gene ID: HRGMv2_4626_26_25
Type: TC
Location: 25198 - 26031 (-)
Type: TC
Location: 25198 - 26031 (-)
Gene ID: HRGMv2_4626_26_26
Type: TC
Location: 26231 - 27490 (+)
Type: TC
Location: 26231 - 27490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.