Cluster: HRGMv2_4626_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_18 | HRGMv2_4626_18_23 | 17978 | 21496 | - | GT2 | GT2 |
| STP | HRGMv2_4626_18 | HRGMv2_4626_18_24 | 22172 | 23377 | - | Aminotran_1_2 |
| TF | HRGMv2_4626_18 | HRGMv2_4626_18_25 | 23721 | 24497 | + | Trans_reg_C |
| TC | HRGMv2_4626_18 | HRGMv2_4626_18_26 | 24613 | 25407 | - | 1.A.30.1.1 |
| TC | HRGMv2_4626_18 | HRGMv2_4626_18_27 | 25394 | 26269 | - | 1.A.30.1.1 |
Gene ID: HRGMv2_4626_18_23
Type: CAZyme
Location: 17978 - 21496 (-)
Type: CAZyme
Location: 17978 - 21496 (-)
Gene ID: HRGMv2_4626_18_24
Type: STP
Location: 22172 - 23377 (-)
Type: STP
Location: 22172 - 23377 (-)
Gene ID: HRGMv2_4626_18_25
Type: TF
Location: 23721 - 24497 (+)
Type: TF
Location: 23721 - 24497 (+)
Gene ID: HRGMv2_4626_18_26
Type: TC
Location: 24613 - 25407 (-)
Type: TC
Location: 24613 - 25407 (-)
Gene ID: HRGMv2_4626_18_27
Type: TC
Location: 25394 - 26269 (-)
Type: TC
Location: 25394 - 26269 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.