Cluster: HRGMv2_4626_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_10653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_15 | HRGMv2_4626_15_44 | 47772 | 49388 | - | GT83 |
| TF | HRGMv2_4626_15 | HRGMv2_4626_15_45 | 49636 | 50334 | + | GntR |
| TC | HRGMv2_4626_15 | HRGMv2_4626_15_46 | 50383 | 52263 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_4626_15_44
Type: CAZyme
Location: 47772 - 49388 (-)
Type: CAZyme
Location: 47772 - 49388 (-)
Gene ID: HRGMv2_4626_15_45
Type: TF
Location: 49636 - 50334 (+)
Type: TF
Location: 49636 - 50334 (+)
Gene ID: HRGMv2_4626_15_46
Type: TC
Location: 50383 - 52263 (-)
Type: TC
Location: 50383 - 52263 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.