Cluster: HRGMv2_4626_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_09158
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_1 | HRGMv2_4626_1_72 | 88010 | 90361 | + | GH50 |
| peptidase | HRGMv2_4626_1 | HRGMv2_4626_1_73 | 90474 | 91619 | + | S12.UNW |
| peptidase | HRGMv2_4626_1 | HRGMv2_4626_1_74 | 91960 | 93105 | + | S12.UPW |
| TC | HRGMv2_4626_1 | HRGMv2_4626_1_75 | 93214 | 94338 | + | 1.B.6.1.3 |
Gene ID: HRGMv2_4626_1_72
Type: CAZyme
Location: 88010 - 90361 (+)
Type: CAZyme
Location: 88010 - 90361 (+)
Gene ID: HRGMv2_4626_1_73
Type: peptidase
Location: 90474 - 91619 (+)
Type: peptidase
Location: 90474 - 91619 (+)
Gene ID: HRGMv2_4626_1_74
Type: peptidase
Location: 91960 - 93105 (+)
Type: peptidase
Location: 91960 - 93105 (+)
Gene ID: HRGMv2_4626_1_75
Type: TC
Location: 93214 - 94338 (+)
Type: TC
Location: 93214 - 94338 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.