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Cluster: HRGMv2_4578_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4578_3 HRGMv2_4578_3_47 55366 57204 + 1.C.39.4.6
TC HRGMv2_4578_3 HRGMv2_4578_3_48 57413 58120 - 2.A.122.1.4
TC HRGMv2_4578_3 HRGMv2_4578_3_49 58101 58493 - 1.E.14.1.17
pfam HRGMv2_4578_3 HRGMv2_4578_3_50 58720 60198 - Mur_ligase_C | Mur_ligase_M
pfam HRGMv2_4578_3 HRGMv2_4578_3_51 60212 61738 - POTRA_1
CAZyme HRGMv2_4578_3 HRGMv2_4578_3_52 61792 62919 - GT28
TC HRGMv2_4578_3 HRGMv2_4578_3_53 62933 64216 - 2.A.103.1.3
Gene ID: HRGMv2_4578_3_47
Type: TC
Location: 55366 - 57204 (+)
Gene ID: HRGMv2_4578_3_48
Type: TC
Location: 57413 - 58120 (-)
Gene ID: HRGMv2_4578_3_49
Type: TC
Location: 58101 - 58493 (-)
Gene ID: HRGMv2_4578_3_50
Type: pfam
Location: 58720 - 60198 (-)
Gene ID: HRGMv2_4578_3_51
Type: pfam
Location: 60212 - 61738 (-)
Gene ID: HRGMv2_4578_3_52
Type: CAZyme
Location: 61792 - 62919 (-)
Gene ID: HRGMv2_4578_3_53
Type: TC
Location: 62933 - 64216 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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