Cluster: HRGMv2_4578_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4578
- CGC Family ID: CGCFAM_00252
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4578_3 | HRGMv2_4578_3_17 | 13126 | 14640 | - | 4.C.1.1.4 |
| pfam | HRGMv2_4578_3 | HRGMv2_4578_3_18 | 15114 | 16238 | + | Acyl_transf_3 |
| NULL(UNKNOWN) | HRGMv2_4578_3 | HRGMv2_4578_3_19 | 16321 | 17160 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4578_3 | HRGMv2_4578_3_20 | 17185 | 18792 | + | GT4 |
| sulfatase | HRGMv2_4578_3 | HRGMv2_4578_3_21 | 18876 | 19448 | - | S1_7 |
| TC | HRGMv2_4578_3 | HRGMv2_4578_3_22 | 19531 | 20868 | - | 2.A.11.1.2 |
| TC | HRGMv2_4578_3 | HRGMv2_4578_3_23 | 21083 | 23254 | - | 2.A.21.9.1 |
Gene ID: HRGMv2_4578_3_17
Type: TC
Location: 13126 - 14640 (-)
Type: TC
Location: 13126 - 14640 (-)
Gene ID: HRGMv2_4578_3_18
Type: pfam
Location: 15114 - 16238 (+)
Type: pfam
Location: 15114 - 16238 (+)
Gene ID: HRGMv2_4578_3_19
Type:
Location: 16321 - 17160 (+)
Type:
Location: 16321 - 17160 (+)
Gene ID: HRGMv2_4578_3_20
Type: CAZyme
Location: 17185 - 18792 (+)
Type: CAZyme
Location: 17185 - 18792 (+)
Gene ID: HRGMv2_4578_3_21
Type: sulfatase
Location: 18876 - 19448 (-)
Type: sulfatase
Location: 18876 - 19448 (-)
Gene ID: HRGMv2_4578_3_22
Type: TC
Location: 19531 - 20868 (-)
Type: TC
Location: 19531 - 20868 (-)
Gene ID: HRGMv2_4578_3_23
Type: TC
Location: 21083 - 23254 (-)
Type: TC
Location: 21083 - 23254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934533135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.