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Cluster: HRGMv2_4578_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4578_33 HRGMv2_4578_33_1 2 1084 - 3.A.1.2.3
TC HRGMv2_4578_33 HRGMv2_4578_33_2 1264 2295 - 3.A.1.2.3
TC HRGMv2_4578_33 HRGMv2_4578_33_3 2746 4041 - 2.A.66.1.37
STP HRGMv2_4578_33 HRGMv2_4578_33_4 4157 5005 + PfkB
pfam HRGMv2_4578_33 HRGMv2_4578_33_5 4852 6087 - Peptidase_M50
TC HRGMv2_4578_33 HRGMv2_4578_33_6 6239 7579 - 2.A.56.1.5
pfam HRGMv2_4578_33 HRGMv2_4578_33_7 7581 8102 - DctQ
TC HRGMv2_4578_33 HRGMv2_4578_33_8 8205 9281 - 2.A.56.1.1
CAZyme HRGMv2_4578_33 HRGMv2_4578_33_9 9601 12297 - GH28
STP HRGMv2_4578_33 HRGMv2_4578_33_10 12516 13532 - DctP
TF HRGMv2_4578_33 HRGMv2_4578_33_11 13529 14347 - HTH_AraC | HTH_AraC
TC HRGMv2_4578_33 HRGMv2_4578_33_12 14344 15894 - 8.A.59.2.1
Gene ID: HRGMv2_4578_33_1
Type: TC
Location: 2 - 1084 (-)
Gene ID: HRGMv2_4578_33_2
Type: TC
Location: 1264 - 2295 (-)
Gene ID: HRGMv2_4578_33_3
Type: TC
Location: 2746 - 4041 (-)
Gene ID: HRGMv2_4578_33_4
Type: STP
Location: 4157 - 5005 (+)
Gene ID: HRGMv2_4578_33_5
Type: pfam
Location: 4852 - 6087 (-)
Gene ID: HRGMv2_4578_33_6
Type: TC
Location: 6239 - 7579 (-)
Gene ID: HRGMv2_4578_33_7
Type: pfam
Location: 7581 - 8102 (-)
Gene ID: HRGMv2_4578_33_8
Type: TC
Location: 8205 - 9281 (-)
Gene ID: HRGMv2_4578_33_9
Type: CAZyme
Location: 9601 - 12297 (-)
Gene ID: HRGMv2_4578_33_10
Type: STP
Location: 12516 - 13532 (-)
Gene ID: HRGMv2_4578_33_11
Type: TF
Location: 13529 - 14347 (-)
Gene ID: HRGMv2_4578_33_12
Type: TC
Location: 14344 - 15894 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4578_33_9 vegetarian > vegan 4.44362 0.01882

🧭 Explore Read Mapping of CGC

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