Cluster: HRGMv2_4578_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4578
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4578_31 | HRGMv2_4578_31_1 | 3 | 449 | - | 3.A.2.1.5 |
| TC | HRGMv2_4578_31 | HRGMv2_4578_31_2 | 474 | 1322 | - | 3.A.2.1.5 |
| TC | HRGMv2_4578_31 | HRGMv2_4578_31_3 | 1344 | 2864 | - | 3.A.2.1.5 |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_4 | 3080 | 3619 | - | OSCP |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_5 | 3616 | 4122 | - | ATP-synt_B |
| TC | HRGMv2_4578_31 | HRGMv2_4578_31_6 | 4165 | 4446 | - | 3.A.2.1.5 |
| TC | HRGMv2_4578_31 | HRGMv2_4578_31_7 | 4503 | 5246 | - | 3.A.2.1.5 |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_8 | 5250 | 5750 | - | ATP-synt_I |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_9 | 5769 | 6086 | - | ATPase_gene1 |
| CAZyme | HRGMv2_4578_31 | HRGMv2_4578_31_10 | 6428 | 7846 | - | GT5 |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_11 | 7993 | 9120 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4578_31 | HRGMv2_4578_31_12 | 9114 | 10307 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4578_31 | HRGMv2_4578_31_13 | 10381 | 12570 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_4578_31_1
Type: TC
Location: 3 - 449 (-)
Type: TC
Location: 3 - 449 (-)
Gene ID: HRGMv2_4578_31_2
Type: TC
Location: 474 - 1322 (-)
Type: TC
Location: 474 - 1322 (-)
Gene ID: HRGMv2_4578_31_3
Type: TC
Location: 1344 - 2864 (-)
Type: TC
Location: 1344 - 2864 (-)
Gene ID: HRGMv2_4578_31_4
Type: pfam
Location: 3080 - 3619 (-)
Type: pfam
Location: 3080 - 3619 (-)
Gene ID: HRGMv2_4578_31_5
Type: pfam
Location: 3616 - 4122 (-)
Type: pfam
Location: 3616 - 4122 (-)
Gene ID: HRGMv2_4578_31_6
Type: TC
Location: 4165 - 4446 (-)
Type: TC
Location: 4165 - 4446 (-)
Gene ID: HRGMv2_4578_31_7
Type: TC
Location: 4503 - 5246 (-)
Type: TC
Location: 4503 - 5246 (-)
Gene ID: HRGMv2_4578_31_8
Type: pfam
Location: 5250 - 5750 (-)
Type: pfam
Location: 5250 - 5750 (-)
Gene ID: HRGMv2_4578_31_9
Type: pfam
Location: 5769 - 6086 (-)
Type: pfam
Location: 5769 - 6086 (-)
Gene ID: HRGMv2_4578_31_10
Type: CAZyme
Location: 6428 - 7846 (-)
Type: CAZyme
Location: 6428 - 7846 (-)
Gene ID: HRGMv2_4578_31_11
Type: pfam
Location: 7993 - 9120 (-)
Type: pfam
Location: 7993 - 9120 (-)
Gene ID: HRGMv2_4578_31_12
Type: pfam
Location: 9114 - 10307 (-)
Type: pfam
Location: 9114 - 10307 (-)
Gene ID: HRGMv2_4578_31_13
Type: CAZyme
Location: 10381 - 12570 (-)
Type: CAZyme
Location: 10381 - 12570 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934533135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.