Cluster: HRGMv2_4578_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4578
- CGC Family ID: CGCFAM_04710
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4578_20 | HRGMv2_4578_20_20 | 23809 | 26256 | - | GH3 |
| STP | HRGMv2_4578_20 | HRGMv2_4578_20_21 | 26902 | 28542 | + | SBP_bac_5 |
| TC | HRGMv2_4578_20 | HRGMv2_4578_20_22 | 28642 | 29622 | + | 3.A.1.5.11 |
| TC | HRGMv2_4578_20 | HRGMv2_4578_20_23 | 29615 | 30508 | + | 3.A.1.5.27 |
| TC | HRGMv2_4578_20 | HRGMv2_4578_20_24 | 30524 | 31513 | + | 3.A.1.5.37 |
| TC | HRGMv2_4578_20 | HRGMv2_4578_20_25 | 31517 | 32464 | + | 3.A.1.5.20 |
Gene ID: HRGMv2_4578_20_20
Type: CAZyme
Location: 23809 - 26256 (-)
Type: CAZyme
Location: 23809 - 26256 (-)
Gene ID: HRGMv2_4578_20_21
Type: STP
Location: 26902 - 28542 (+)
Type: STP
Location: 26902 - 28542 (+)
Gene ID: HRGMv2_4578_20_22
Type: TC
Location: 28642 - 29622 (+)
Type: TC
Location: 28642 - 29622 (+)
Gene ID: HRGMv2_4578_20_23
Type: TC
Location: 29615 - 30508 (+)
Type: TC
Location: 29615 - 30508 (+)
Gene ID: HRGMv2_4578_20_24
Type: TC
Location: 30524 - 31513 (+)
Type: TC
Location: 30524 - 31513 (+)
Gene ID: HRGMv2_4578_20_25
Type: TC
Location: 31517 - 32464 (+)
Type: TC
Location: 31517 - 32464 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934533135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.