Cluster: HRGMv2_4578_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4578
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4578_13 | HRGMv2_4578_13_1 | 3 | 878 | + | 3.A.1.1.11 |
| TC | HRGMv2_4578_13 | HRGMv2_4578_13_2 | 1084 | 2010 | + | 3.A.1.1.11 |
| TC | HRGMv2_4578_13 | HRGMv2_4578_13_3 | 2022 | 2879 | + | 3.A.1.1.11 |
| TF | HRGMv2_4578_13 | HRGMv2_4578_13_4 | 2970 | 3782 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4578_13 | HRGMv2_4578_13_5 | 3924 | 5489 | + | GH28 |
| CAZyme | HRGMv2_4578_13 | HRGMv2_4578_13_6 | 5494 | 6639 | + | GH105 |
Gene ID: HRGMv2_4578_13_1
Type: TC
Location: 3 - 878 (+)
Type: TC
Location: 3 - 878 (+)
Gene ID: HRGMv2_4578_13_2
Type: TC
Location: 1084 - 2010 (+)
Type: TC
Location: 1084 - 2010 (+)
Gene ID: HRGMv2_4578_13_3
Type: TC
Location: 2022 - 2879 (+)
Type: TC
Location: 2022 - 2879 (+)
Gene ID: HRGMv2_4578_13_4
Type: TF
Location: 2970 - 3782 (-)
Type: TF
Location: 2970 - 3782 (-)
Gene ID: HRGMv2_4578_13_5
Type: CAZyme
Location: 3924 - 5489 (+)
Type: CAZyme
Location: 3924 - 5489 (+)
Gene ID: HRGMv2_4578_13_6
Type: CAZyme
Location: 5494 - 6639 (+)
Type: CAZyme
Location: 5494 - 6639 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934533135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.