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Cluster: HRGMv2_4578_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4578_12 HRGMv2_4578_12_39 40507 41154 - 2.A.38.4.6
TC HRGMv2_4578_12 HRGMv2_4578_12_40 41166 42503 - 2.A.38.4.1
pfam HRGMv2_4578_12 HRGMv2_4578_12_41 42594 44234 - Resolvase | Recombinase | Zn_ribbon_recom
TC HRGMv2_4578_12 HRGMv2_4578_12_42 44572 45873 + 4.A.3.2.8
TC HRGMv2_4578_12 HRGMv2_4578_12_43 45899 46198 + 4.A.3.2.6
pfam HRGMv2_4578_12 HRGMv2_4578_12_44 46202 46597 + PTS_IIA
CAZyme HRGMv2_4578_12 HRGMv2_4578_12_45 46603 48009 + GH1
TF HRGMv2_4578_12 HRGMv2_4578_12_46 48091 48897 + HTH_6
CAZyme HRGMv2_4578_12 HRGMv2_4578_12_47 49001 50254 + GH1
Gene ID: HRGMv2_4578_12_39
Type: TC
Location: 40507 - 41154 (-)
Gene ID: HRGMv2_4578_12_40
Type: TC
Location: 41166 - 42503 (-)
Gene ID: HRGMv2_4578_12_41
Type: pfam
Location: 42594 - 44234 (-)
Gene ID: HRGMv2_4578_12_42
Type: TC
Location: 44572 - 45873 (+)
Gene ID: HRGMv2_4578_12_43
Type: TC
Location: 45899 - 46198 (+)
Gene ID: HRGMv2_4578_12_44
Type: pfam
Location: 46202 - 46597 (+)
Gene ID: HRGMv2_4578_12_45
Type: CAZyme
Location: 46603 - 48009 (+)
Gene ID: HRGMv2_4578_12_46
Type: TF
Location: 48091 - 48897 (+)
Gene ID: HRGMv2_4578_12_47
Type: CAZyme
Location: 49001 - 50254 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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