dbCAN Logo

Cluster: HRGMv2_4578_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4578_12 HRGMv2_4578_12_7 7286 7987 - 1.A.14.2.2
pfam HRGMv2_4578_12 HRGMv2_4578_12_8 8121 9203 + Radical_SAM | HemN_C
TC HRGMv2_4578_12 HRGMv2_4578_12_9 9186 9776 - 3.A.1.17.3
pfam HRGMv2_4578_12 HRGMv2_4578_12_10 9773 10546 - BPD_transp_1
TC HRGMv2_4578_12 HRGMv2_4578_12_11 10692 11957 + 2.A.26.1.9
pfam HRGMv2_4578_12 HRGMv2_4578_12_12 12054 13079 - VitK2_biosynth | OpuAC | NMT1 | Phosphonate-bd | NMT1_2
TF HRGMv2_4578_12 HRGMv2_4578_12_13 13245 13925 + 0037767
CAZyme HRGMv2_4578_12 HRGMv2_4578_12_14 13940 14920 + GT2
pfam HRGMv2_4578_12 HRGMv2_4578_12_15 14917 15504 + Flavin_Reduct
TC HRGMv2_4578_12 HRGMv2_4578_12_16 15501 16289 + 2.A.79.1.5
pfam HRGMv2_4578_12 HRGMv2_4578_12_17 16286 16738 + ThrE | ThrE_2
pfam HRGMv2_4578_12 HRGMv2_4578_12_18 16772 17836 + SseB | Sel1 | Sel1 | Sel1
TC HRGMv2_4578_12 HRGMv2_4578_12_19 17951 19768 + 1.A.33.1.4
TC HRGMv2_4578_12 HRGMv2_4578_12_20 19866 20630 - 3.A.1.3.25
TC HRGMv2_4578_12 HRGMv2_4578_12_21 20620 21384 - 3.A.1.3.20
TC HRGMv2_4578_12 HRGMv2_4578_12_22 21493 22338 - 3.A.1.3.27
NULL(UNKNOWN) HRGMv2_4578_12 HRGMv2_4578_12_23 22879 23511 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4578_12 HRGMv2_4578_12_24 23991 24914 + 3.A.1.24.5
TC HRGMv2_4578_12 HRGMv2_4578_12_25 24933 25946 + 3.A.1.24.2
TC HRGMv2_4578_12 HRGMv2_4578_12_26 25943 26599 + 3.A.1.24.5
Gene ID: HRGMv2_4578_12_7
Type: TC
Location: 7286 - 7987 (-)
Gene ID: HRGMv2_4578_12_8
Type: pfam
Location: 8121 - 9203 (+)
Gene ID: HRGMv2_4578_12_9
Type: TC
Location: 9186 - 9776 (-)
Gene ID: HRGMv2_4578_12_10
Type: pfam
Location: 9773 - 10546 (-)
Gene ID: HRGMv2_4578_12_11
Type: TC
Location: 10692 - 11957 (+)
Gene ID: HRGMv2_4578_12_12
Type: pfam
Location: 12054 - 13079 (-)
Gene ID: HRGMv2_4578_12_13
Type: TF
Location: 13245 - 13925 (+)
Gene ID: HRGMv2_4578_12_14
Type: CAZyme
Location: 13940 - 14920 (+)
Gene ID: HRGMv2_4578_12_15
Type: pfam
Location: 14917 - 15504 (+)
Gene ID: HRGMv2_4578_12_16
Type: TC
Location: 15501 - 16289 (+)
Gene ID: HRGMv2_4578_12_17
Type: pfam
Location: 16286 - 16738 (+)
Gene ID: HRGMv2_4578_12_18
Type: pfam
Location: 16772 - 17836 (+)
Gene ID: HRGMv2_4578_12_19
Type: TC
Location: 17951 - 19768 (+)
Gene ID: HRGMv2_4578_12_20
Type: TC
Location: 19866 - 20630 (-)
Gene ID: HRGMv2_4578_12_21
Type: TC
Location: 20620 - 21384 (-)
Gene ID: HRGMv2_4578_12_22
Type: TC
Location: 21493 - 22338 (-)
Gene ID: HRGMv2_4578_12_23
Type:
Location: 22879 - 23511 (+)
Gene ID: HRGMv2_4578_12_24
Type: TC
Location: 23991 - 24914 (+)
Gene ID: HRGMv2_4578_12_25
Type: TC
Location: 24933 - 25946 (+)
Gene ID: HRGMv2_4578_12_26
Type: TC
Location: 25943 - 26599 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List