Cluster: HRGMv2_4578_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4578
- CGC Family ID: CGCFAM_00010
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4578_8 | HRGMv2_4578_8_15 | 22217 | 23707 | - | GH77 |
| TC | HRGMv2_4578_8 | HRGMv2_4578_8_16 | 23721 | 24563 | - | 3.A.1.1.45 |
| TC | HRGMv2_4578_8 | HRGMv2_4578_8_17 | 24563 | 25414 | - | 3.A.1.1.45 |
| TC | HRGMv2_4578_8 | HRGMv2_4578_8_18 | 25501 | 26844 | - | 3.A.1.1.45 |
| TF | HRGMv2_4578_8 | HRGMv2_4578_8_19 | 26915 | 27934 | - | LacI |
| TC | HRGMv2_4578_8 | HRGMv2_4578_8_20 | 28306 | 31533 | - | 3.A.1.122.14 |
Gene ID: HRGMv2_4578_8_15
Type: CAZyme
Location: 22217 - 23707 (-)
Type: CAZyme
Location: 22217 - 23707 (-)
Gene ID: HRGMv2_4578_8_16
Type: TC
Location: 23721 - 24563 (-)
Type: TC
Location: 23721 - 24563 (-)
Gene ID: HRGMv2_4578_8_17
Type: TC
Location: 24563 - 25414 (-)
Type: TC
Location: 24563 - 25414 (-)
Gene ID: HRGMv2_4578_8_18
Type: TC
Location: 25501 - 26844 (-)
Type: TC
Location: 25501 - 26844 (-)
Gene ID: HRGMv2_4578_8_19
Type: TF
Location: 26915 - 27934 (-)
Type: TF
Location: 26915 - 27934 (-)
Gene ID: HRGMv2_4578_8_20
Type: TC
Location: 28306 - 31533 (-)
Type: TC
Location: 28306 - 31533 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934533135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.