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Cluster: HRGMv2_4578_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4578_6 HRGMv2_4578_6_46 49501 51420 + GH2
CAZyme HRGMv2_4578_6 HRGMv2_4578_6_47 51533 54784 + GH3
NULL(UNKNOWN) HRGMv2_4578_6 HRGMv2_4578_6_48 54786 55220 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4578_6 HRGMv2_4578_6_49 55325 56890 + 2.A.2.3.6
pfam HRGMv2_4578_6 HRGMv2_4578_6_50 57076 58566 - DUF1846 | DUF1846_C
TF HRGMv2_4578_6 HRGMv2_4578_6_51 58714 59571 - HTH_1
TC HRGMv2_4578_6 HRGMv2_4578_6_52 59738 60547 - 9.B.143.2.3
pfam HRGMv2_4578_6 HRGMv2_4578_6_53 60756 61583 + SpoU_methylase
TC HRGMv2_4578_6 HRGMv2_4578_6_54 61828 62055 + 3.D.1.6.4
Gene ID: HRGMv2_4578_6_46
Type: CAZyme
Location: 49501 - 51420 (+)
Gene ID: HRGMv2_4578_6_47
Type: CAZyme
Location: 51533 - 54784 (+)
Gene ID: HRGMv2_4578_6_48
Type:
Location: 54786 - 55220 (+)
Gene ID: HRGMv2_4578_6_49
Type: TC
Location: 55325 - 56890 (+)
Gene ID: HRGMv2_4578_6_50
Type: pfam
Location: 57076 - 58566 (-)
Gene ID: HRGMv2_4578_6_51
Type: TF
Location: 58714 - 59571 (-)
Gene ID: HRGMv2_4578_6_52
Type: TC
Location: 59738 - 60547 (-)
Gene ID: HRGMv2_4578_6_53
Type: pfam
Location: 60756 - 61583 (+)
Gene ID: HRGMv2_4578_6_54
Type: TC
Location: 61828 - 62055 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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