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Cluster: HRGMv2_4578_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4578_2 HRGMv2_4578_2_38 36325 37614 - 2.A.49.9.2
TC HRGMv2_4578_2 HRGMv2_4578_2_39 37835 39574 - 1.A.11.2.7
pfam HRGMv2_4578_2 HRGMv2_4578_2_40 39902 40291 - DUF1622
pfam HRGMv2_4578_2 HRGMv2_4578_2_41 40319 40954 - LacAB_rpiB | DUF3666
TC HRGMv2_4578_2 HRGMv2_4578_2_42 41085 41759 - 2.A.115.2.9
CAZyme HRGMv2_4578_2 HRGMv2_4578_2_43 41775 43217 - GH1
sulfatase HRGMv2_4578_2 HRGMv2_4578_2_44 43369 44145 + S1_2
TC HRGMv2_4578_2 HRGMv2_4578_2_45 44155 45552 - 2.A.66.1.33
Gene ID: HRGMv2_4578_2_38
Type: TC
Location: 36325 - 37614 (-)
Gene ID: HRGMv2_4578_2_39
Type: TC
Location: 37835 - 39574 (-)
Gene ID: HRGMv2_4578_2_40
Type: pfam
Location: 39902 - 40291 (-)
Gene ID: HRGMv2_4578_2_41
Type: pfam
Location: 40319 - 40954 (-)
Gene ID: HRGMv2_4578_2_42
Type: TC
Location: 41085 - 41759 (-)
Gene ID: HRGMv2_4578_2_43
Type: CAZyme
Location: 41775 - 43217 (-)
Gene ID: HRGMv2_4578_2_44
Type: sulfatase
Location: 43369 - 44145 (+)
Gene ID: HRGMv2_4578_2_45
Type: TC
Location: 44155 - 45552 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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