dbCAN HGM

Cluster: HRGMv2_4573_CGC10

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_4573_34	HRGMv2_4573_34_4	5103	7253	+	CE7
NULL(UNKNOWN)	HRGMv2_4573_34	HRGMv2_4573_34_5	7277	8044	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	HRGMv2_4573_34	HRGMv2_4573_34_6	8035	9756	+	FAD_oxidored \| FAD_oxidored
CAZyme	HRGMv2_4573_34	HRGMv2_4573_34_7	9753	11321	+	GH31_19
CAZyme	HRGMv2_4573_34	HRGMv2_4573_34_8	11332	12474	+	GH27
NULL(UNKNOWN)	HRGMv2_4573_34	HRGMv2_4573_34_9	12471	12686	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	HRGMv2_4573_34	HRGMv2_4573_34_10	12957	14183	+	GH109
NULL(UNKNOWN)	HRGMv2_4573_34	HRGMv2_4573_34_11	14272	14664	-	NULL(UNKNOWN) [View Structural Homologs]
pfam	HRGMv2_4573_34	HRGMv2_4573_34_12	14692	15372	-	Pro_isomerase
TC	HRGMv2_4573_34	HRGMv2_4573_34_13	15515	16633	+	2.A.86.1.3
pfam	HRGMv2_4573_34	HRGMv2_4573_34_14	16712	17059	+	Trns_repr_metal
TC	HRGMv2_4573_34	HRGMv2_4573_34_15	17107	19665	+	3.A.3.5.15

Gene ID: HRGMv2_4573_34_4
Type: CAZyme
Location: 5103 - 7253 (+)

Gene ID: HRGMv2_4573_34_5
Type:
Location: 7277 - 8044 (+)

Gene ID: HRGMv2_4573_34_6
Type: pfam
Location: 8035 - 9756 (+)

Gene ID: HRGMv2_4573_34_7
Type: CAZyme
Location: 9753 - 11321 (+)

Gene ID: HRGMv2_4573_34_8
Type: CAZyme
Location: 11332 - 12474 (+)

Gene ID: HRGMv2_4573_34_9
Type:
Location: 12471 - 12686 (+)

Gene ID: HRGMv2_4573_34_10
Type: CAZyme
Location: 12957 - 14183 (+)

Gene ID: HRGMv2_4573_34_11
Type:
Location: 14272 - 14664 (-)

Gene ID: HRGMv2_4573_34_12
Type: pfam
Location: 14692 - 15372 (-)

Gene ID: HRGMv2_4573_34_13
Type: TC
Location: 15515 - 16633 (+)

Gene ID: HRGMv2_4573_34_14
Type: pfam
Location: 16712 - 17059 (+)

Gene ID: HRGMv2_4573_34_15
Type: TC
Location: 17107 - 19665 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4573_34_4	vegan > omnivore	1.55388	0.02248
HRGMv2_4573_34_6	vegan > omnivore	2.06175	0.02248
HRGMv2_4573_34_8	vegan > omnivore	1.10420	0.02248
HRGMv2_4573_34_9	vegan > omnivore	1.50103	0.02248
HRGMv2_4573_34_14	vegan > omnivore	2.50256	0.02248