Cluster: HRGMv2_4568_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: beta-mannan/fructan
- Genome ID: HRGMv2_4568
- CGC Family ID: CGCFAM_00094
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4568_12 | HRGMv2_4568_12_25 | 23336 | 24127 | + | 8.A.5.1.6 |
| TC | HRGMv2_4568_12 | HRGMv2_4568_12_26 | 24115 | 24339 | + | 8.A.5.1.6 |
| pfam | HRGMv2_4568_12 | HRGMv2_4568_12_27 | 24404 | 24961 | + | Flavin_Reduct |
| TF | HRGMv2_4568_12 | HRGMv2_4568_12_28 | 25124 | 26116 | + | LacI |
| TC | HRGMv2_4568_12 | HRGMv2_4568_12_29 | 26299 | 28224 | + | 4.A.1.2.12 |
| CAZyme | HRGMv2_4568_12 | HRGMv2_4568_12_30 | 28242 | 29585 | + | GH32 |
Gene ID: HRGMv2_4568_12_25
Type: TC
Location: 23336 - 24127 (+)
Type: TC
Location: 23336 - 24127 (+)
Gene ID: HRGMv2_4568_12_26
Type: TC
Location: 24115 - 24339 (+)
Type: TC
Location: 24115 - 24339 (+)
Gene ID: HRGMv2_4568_12_27
Type: pfam
Location: 24404 - 24961 (+)
Type: pfam
Location: 24404 - 24961 (+)
Gene ID: HRGMv2_4568_12_28
Type: TF
Location: 25124 - 26116 (+)
Type: TF
Location: 25124 - 26116 (+)
Gene ID: HRGMv2_4568_12_29
Type: TC
Location: 26299 - 28224 (+)
Type: TC
Location: 26299 - 28224 (+)
Gene ID: HRGMv2_4568_12_30
Type: CAZyme
Location: 28242 - 29585 (+)
Type: CAZyme
Location: 28242 - 29585 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp934476685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.