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Cluster: HRGMv2_4568_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4568_32 HRGMv2_4568_32_3 1252 3366 + 9.B.106.2.2
pfam HRGMv2_4568_32 HRGMv2_4568_32_4 3376 4260 + MMR_HSR1 | RsgA_GTPase | RsgA_N
pfam HRGMv2_4568_32 HRGMv2_4568_32_5 4253 4888 + TPK_catalytic | TPK_B1_binding
CAZyme HRGMv2_4568_32 HRGMv2_4568_32_6 5145 6041 + GT2
pfam HRGMv2_4568_32 HRGMv2_4568_32_7 6041 7153 + Glyphos_transf
pfam HRGMv2_4568_32 HRGMv2_4568_32_8 7150 8010 + ABC2_membrane
TC HRGMv2_4568_32 HRGMv2_4568_32_9 8039 8776 + 3.A.1.103.1
Gene ID: HRGMv2_4568_32_3
Type: TC
Location: 1252 - 3366 (+)
Gene ID: HRGMv2_4568_32_4
Type: pfam
Location: 3376 - 4260 (+)
Gene ID: HRGMv2_4568_32_5
Type: pfam
Location: 4253 - 4888 (+)
Gene ID: HRGMv2_4568_32_6
Type: CAZyme
Location: 5145 - 6041 (+)
Gene ID: HRGMv2_4568_32_7
Type: pfam
Location: 6041 - 7153 (+)
Gene ID: HRGMv2_4568_32_8
Type: pfam
Location: 7150 - 8010 (+)
Gene ID: HRGMv2_4568_32_9
Type: TC
Location: 8039 - 8776 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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