Cluster: HRGMv2_4565_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4565
- CGC Family ID: CGCFAM_00010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4565_99 | HRGMv2_4565_99_1 | 3 | 266 | + | 3.A.1.1.45 |
| TC | HRGMv2_4565_99 | HRGMv2_4565_99_2 | 266 | 1126 | + | 3.A.1.1.45 |
| TF | HRGMv2_4565_99 | HRGMv2_4565_99_3 | 1316 | 2308 | + | LacI |
| pfam | HRGMv2_4565_99 | HRGMv2_4565_99_4 | 2381 | 3478 | + | ADP_ribosyl_GH |
| CAZyme | HRGMv2_4565_99 | HRGMv2_4565_99_5 | 3573 | 5228 | + | GH13_31 |
| CAZyme | HRGMv2_4565_99 | HRGMv2_4565_99_6 | 5322 | 6659 | + | GH27 |
Gene ID: HRGMv2_4565_99_1
Type: TC
Location: 3 - 266 (+)
Type: TC
Location: 3 - 266 (+)
Gene ID: HRGMv2_4565_99_2
Type: TC
Location: 266 - 1126 (+)
Type: TC
Location: 266 - 1126 (+)
Gene ID: HRGMv2_4565_99_3
Type: TF
Location: 1316 - 2308 (+)
Type: TF
Location: 1316 - 2308 (+)
Gene ID: HRGMv2_4565_99_4
Type: pfam
Location: 2381 - 3478 (+)
Type: pfam
Location: 2381 - 3478 (+)
Gene ID: HRGMv2_4565_99_5
Type: CAZyme
Location: 3573 - 5228 (+)
Type: CAZyme
Location: 3573 - 5228 (+)
Gene ID: HRGMv2_4565_99_6
Type: CAZyme
Location: 5322 - 6659 (+)
Type: CAZyme
Location: 5322 - 6659 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Massiliimalia
Species
Massiliimalia massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.