Cluster: HRGMv2_4564_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_07753
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4564_1 | HRGMv2_4564_1_481 | 498416 | 501073 | - | GH106 |
| pfam | HRGMv2_4564_1 | HRGMv2_4564_1_482 | 501206 | 502060 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4564_1 | HRGMv2_4564_1_483 | 502076 | 503887 | - | CBM32 | GH43_28 |
| CAZyme | HRGMv2_4564_1 | HRGMv2_4564_1_484 | 503884 | 506103 | - | GH2 |
| TF | HRGMv2_4564_1 | HRGMv2_4564_1_485 | 506229 | 507443 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_4564_1 | HRGMv2_4564_1_486 | 507501 | 508976 | - | MFS_2 |
| CAZyme | HRGMv2_4564_1 | HRGMv2_4564_1_487 | 509240 | 510547 | + | GH1 |
| STP | HRGMv2_4564_1 | HRGMv2_4564_1_488 | 510633 | 511193 | - | TetR_N |
| pfam | HRGMv2_4564_1 | HRGMv2_4564_1_489 | 511367 | 512707 | + | MatE | MatE |
| TC | HRGMv2_4564_1 | HRGMv2_4564_1_490 | 512961 | 513833 | - | 3.A.1.9.2 |
| TC | HRGMv2_4564_1 | HRGMv2_4564_1_491 | 513830 | 514630 | - | 3.A.1.9.1 |
| TC | HRGMv2_4564_1 | HRGMv2_4564_1_492 | 514599 | 515405 | - | 3.A.1.9.1 |
Gene ID: HRGMv2_4564_1_481
Type: CAZyme
Location: 498416 - 501073 (-)
Type: CAZyme
Location: 498416 - 501073 (-)
Gene ID: HRGMv2_4564_1_482
Type: pfam
Location: 501206 - 502060 (-)
Type: pfam
Location: 501206 - 502060 (-)
Gene ID: HRGMv2_4564_1_483
Type: CAZyme
Location: 502076 - 503887 (-)
Type: CAZyme
Location: 502076 - 503887 (-)
Gene ID: HRGMv2_4564_1_484
Type: CAZyme
Location: 503884 - 506103 (-)
Type: CAZyme
Location: 503884 - 506103 (-)
Gene ID: HRGMv2_4564_1_485
Type: TF
Location: 506229 - 507443 (+)
Type: TF
Location: 506229 - 507443 (+)
Gene ID: HRGMv2_4564_1_486
Type: pfam
Location: 507501 - 508976 (-)
Type: pfam
Location: 507501 - 508976 (-)
Gene ID: HRGMv2_4564_1_487
Type: CAZyme
Location: 509240 - 510547 (+)
Type: CAZyme
Location: 509240 - 510547 (+)
Gene ID: HRGMv2_4564_1_488
Type: STP
Location: 510633 - 511193 (-)
Type: STP
Location: 510633 - 511193 (-)
Gene ID: HRGMv2_4564_1_489
Type: pfam
Location: 511367 - 512707 (+)
Type: pfam
Location: 511367 - 512707 (+)
Gene ID: HRGMv2_4564_1_490
Type: TC
Location: 512961 - 513833 (-)
Type: TC
Location: 512961 - 513833 (-)
Gene ID: HRGMv2_4564_1_491
Type: TC
Location: 513830 - 514630 (-)
Type: TC
Location: 513830 - 514630 (-)
Gene ID: HRGMv2_4564_1_492
Type: TC
Location: 514599 - 515405 (-)
Type: TC
Location: 514599 - 515405 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.