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Cluster: HRGMv2_4564_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4564_18 HRGMv2_4564_18_3 3688 4659 + 3.A.1.1.10
TC HRGMv2_4564_18 HRGMv2_4564_18_4 4676 5644 + 3.A.1.1.29
pfam HRGMv2_4564_18 HRGMv2_4564_18_5 5738 7264 + DUF3502
pfam HRGMv2_4564_18 HRGMv2_4564_18_6 7550 9937 + Glyco_hydro_38N
CAZyme HRGMv2_4564_18 HRGMv2_4564_18_7 10041 11030 + GH130_2
CAZyme HRGMv2_4564_18 HRGMv2_4564_18_8 11336 14506 + GH38
CAZyme HRGMv2_4564_18 HRGMv2_4564_18_9 14648 16504 + GH20
pfam HRGMv2_4564_18 HRGMv2_4564_18_10 16524 17795 + MFS_1
CAZyme HRGMv2_4564_18 HRGMv2_4564_18_11 17846 20452 + GH3
Gene ID: HRGMv2_4564_18_3
Type: TC
Location: 3688 - 4659 (+)
Gene ID: HRGMv2_4564_18_4
Type: TC
Location: 4676 - 5644 (+)
Gene ID: HRGMv2_4564_18_5
Type: pfam
Location: 5738 - 7264 (+)
Gene ID: HRGMv2_4564_18_6
Type: pfam
Location: 7550 - 9937 (+)
Gene ID: HRGMv2_4564_18_7
Type: CAZyme
Location: 10041 - 11030 (+)
Gene ID: HRGMv2_4564_18_8
Type: CAZyme
Location: 11336 - 14506 (+)
Gene ID: HRGMv2_4564_18_9
Type: CAZyme
Location: 14648 - 16504 (+)
Gene ID: HRGMv2_4564_18_10
Type: pfam
Location: 16524 - 17795 (+)
Gene ID: HRGMv2_4564_18_11
Type: CAZyme
Location: 17846 - 20452 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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