Cluster: HRGMv2_4564_CGC40
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_02254
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_9 | HRGMv2_4564_9_68 | 74509 | 75222 | + | 3.A.1.125.2 |
| TC | HRGMv2_4564_9 | HRGMv2_4564_9_69 | 75222 | 79370 | + | 3.A.1.137.2 |
| TF | HRGMv2_4564_9 | HRGMv2_4564_9_70 | 79623 | 80114 | + | MarR |
| TC | HRGMv2_4564_9 | HRGMv2_4564_9_71 | 80126 | 81883 | + | 3.A.1.135.5 |
| TC | HRGMv2_4564_9 | HRGMv2_4564_9_72 | 81883 | 83805 | + | 3.A.1.135.5 |
| CAZyme | HRGMv2_4564_9 | HRGMv2_4564_9_73 | 84107 | 84886 | + | CBM13 |
Gene ID: HRGMv2_4564_9_68
Type: TC
Location: 74509 - 75222 (+)
Type: TC
Location: 74509 - 75222 (+)
Gene ID: HRGMv2_4564_9_69
Type: TC
Location: 75222 - 79370 (+)
Type: TC
Location: 75222 - 79370 (+)
Gene ID: HRGMv2_4564_9_70
Type: TF
Location: 79623 - 80114 (+)
Type: TF
Location: 79623 - 80114 (+)
Gene ID: HRGMv2_4564_9_71
Type: TC
Location: 80126 - 81883 (+)
Type: TC
Location: 80126 - 81883 (+)
Gene ID: HRGMv2_4564_9_72
Type: TC
Location: 81883 - 83805 (+)
Type: TC
Location: 81883 - 83805 (+)
Gene ID: HRGMv2_4564_9_73
Type: CAZyme
Location: 84107 - 84886 (+)
Type: CAZyme
Location: 84107 - 84886 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.