Cluster: HRGMv2_4564_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_5 | HRGMv2_4564_5_97 | 117485 | 118285 | + | 3.A.1.103.6 |
| TC | HRGMv2_4564_5 | HRGMv2_4564_5_98 | 118297 | 119049 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_4564_5 | HRGMv2_4564_5_99 | 119151 | 121037 | + | GT2 | GT2 |
| pfam | HRGMv2_4564_5 | HRGMv2_4564_5_100 | 121057 | 121305 | + | FakA-like_M |
| NULL(UNKNOWN) | HRGMv2_4564_5 | HRGMv2_4564_5_101 | 121298 | 121879 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4564_5 | HRGMv2_4564_5_102 | 121876 | 123714 | + | GT2 |
Gene ID: HRGMv2_4564_5_97
Type: TC
Location: 117485 - 118285 (+)
Type: TC
Location: 117485 - 118285 (+)
Gene ID: HRGMv2_4564_5_98
Type: TC
Location: 118297 - 119049 (+)
Type: TC
Location: 118297 - 119049 (+)
Gene ID: HRGMv2_4564_5_99
Type: CAZyme
Location: 119151 - 121037 (+)
Type: CAZyme
Location: 119151 - 121037 (+)
Gene ID: HRGMv2_4564_5_100
Type: pfam
Location: 121057 - 121305 (+)
Type: pfam
Location: 121057 - 121305 (+)
Gene ID: HRGMv2_4564_5_101
Type:
Location: 121298 - 121879 (+)
Type:
Location: 121298 - 121879 (+)
Gene ID: HRGMv2_4564_5_102
Type: CAZyme
Location: 121876 - 123714 (+)
Type: CAZyme
Location: 121876 - 123714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.