Cluster: HRGMv2_4564_CGC32
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_5 | HRGMv2_4564_5_56 | 70623 | 72569 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_4564_5 | HRGMv2_4564_5_57 | 72588 | 74243 | + | GH13_29 |
| STP | HRGMv2_4564_5 | HRGMv2_4564_5_58 | 74387 | 74839 | + | Sigma70_r2 | Sigma70_r4_2 |
| NULL(UNKNOWN) | HRGMv2_4564_5 | HRGMv2_4564_5_59 | 74839 | 75558 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4564_5 | HRGMv2_4564_5_60 | 75580 | 76452 | + | 3.A.1.148.4 |
Gene ID: HRGMv2_4564_5_56
Type: TC
Location: 70623 - 72569 (+)
Type: TC
Location: 70623 - 72569 (+)
Gene ID: HRGMv2_4564_5_57
Type: CAZyme
Location: 72588 - 74243 (+)
Type: CAZyme
Location: 72588 - 74243 (+)
Gene ID: HRGMv2_4564_5_58
Type: STP
Location: 74387 - 74839 (+)
Type: STP
Location: 74387 - 74839 (+)
Gene ID: HRGMv2_4564_5_59
Type:
Location: 74839 - 75558 (+)
Type:
Location: 74839 - 75558 (+)
Gene ID: HRGMv2_4564_5_60
Type: TC
Location: 75580 - 76452 (+)
Type: TC
Location: 75580 - 76452 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.