Cluster: HRGMv2_4564_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_05711
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_403 | 476936 | 478270 | + | 2.A.66.1.32 |
| CAZyme | HRGMv2_4564_3 | HRGMv2_4564_3_404 | 478472 | 479977 | - | GH79 |
| STP | HRGMv2_4564_3 | HRGMv2_4564_3_405 | 480136 | 480783 | - | TetR_N |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_406 | 481131 | 482546 | + | 2.A.2.3.3 |
Gene ID: HRGMv2_4564_3_403
Type: TC
Location: 476936 - 478270 (+)
Type: TC
Location: 476936 - 478270 (+)
Gene ID: HRGMv2_4564_3_404
Type: CAZyme
Location: 478472 - 479977 (-)
Type: CAZyme
Location: 478472 - 479977 (-)
Gene ID: HRGMv2_4564_3_405
Type: STP
Location: 480136 - 480783 (-)
Type: STP
Location: 480136 - 480783 (-)
Gene ID: HRGMv2_4564_3_406
Type: TC
Location: 481131 - 482546 (+)
Type: TC
Location: 481131 - 482546 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.