Cluster: HRGMv2_4564_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4564_3 | HRGMv2_4564_3_369 | 443640 | 445640 | + | GH42 |
| TF | HRGMv2_4564_3 | HRGMv2_4564_3_370 | 445842 | 446849 | + | LacI |
| pfam | HRGMv2_4564_3 | HRGMv2_4564_3_371 | 447184 | 448473 | + | SBP_bac_8 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_372 | 448584 | 450035 | + | 3.A.1.1.27 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_373 | 450032 | 450925 | + | 3.A.1.1.27 |
Gene ID: HRGMv2_4564_3_369
Type: CAZyme
Location: 443640 - 445640 (+)
Type: CAZyme
Location: 443640 - 445640 (+)
Gene ID: HRGMv2_4564_3_370
Type: TF
Location: 445842 - 446849 (+)
Type: TF
Location: 445842 - 446849 (+)
Gene ID: HRGMv2_4564_3_371
Type: pfam
Location: 447184 - 448473 (+)
Type: pfam
Location: 447184 - 448473 (+)
Gene ID: HRGMv2_4564_3_372
Type: TC
Location: 448584 - 450035 (+)
Type: TC
Location: 448584 - 450035 (+)
Gene ID: HRGMv2_4564_3_373
Type: TC
Location: 450032 - 450925 (+)
Type: TC
Location: 450032 - 450925 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.