Cluster: HRGMv2_4564_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: fructan
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_00035
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_289 | 358227 | 359201 | + | 3.A.1.1.10 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_290 | 359215 | 360129 | + | 3.A.1.1.29 |
| STP | HRGMv2_4564_3 | HRGMv2_4564_3_291 | 360181 | 361878 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4564_3 | HRGMv2_4564_3_292 | 362014 | 363501 | + | GH32 |
| CAZyme | HRGMv2_4564_3 | HRGMv2_4564_3_293 | 363518 | 365308 | + | GH13_4 |
Gene ID: HRGMv2_4564_3_289
Type: TC
Location: 358227 - 359201 (+)
Type: TC
Location: 358227 - 359201 (+)
Gene ID: HRGMv2_4564_3_290
Type: TC
Location: 359215 - 360129 (+)
Type: TC
Location: 359215 - 360129 (+)
Gene ID: HRGMv2_4564_3_291
Type: STP
Location: 360181 - 361878 (+)
Type: STP
Location: 360181 - 361878 (+)
Gene ID: HRGMv2_4564_3_292
Type: CAZyme
Location: 362014 - 363501 (+)
Type: CAZyme
Location: 362014 - 363501 (+)
Gene ID: HRGMv2_4564_3_293
Type: CAZyme
Location: 363518 - 365308 (+)
Type: CAZyme
Location: 363518 - 365308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.