Cluster: HRGMv2_4564_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_01653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4564_3 | HRGMv2_4564_3_173 | 222049 | 225207 | + | GH38 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_174 | 225468 | 226349 | + | 3.A.1.1.20 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_175 | 226349 | 227173 | + | 3.A.1.1.39 |
| pfam | HRGMv2_4564_3 | HRGMv2_4564_3_176 | 227324 | 228136 | + | AP_endonuc_2 |
| TC | HRGMv2_4564_3 | HRGMv2_4564_3_177 | 228284 | 229243 | - | 2.A.19.5.1 |
Gene ID: HRGMv2_4564_3_173
Type: CAZyme
Location: 222049 - 225207 (+)
Type: CAZyme
Location: 222049 - 225207 (+)
Gene ID: HRGMv2_4564_3_174
Type: TC
Location: 225468 - 226349 (+)
Type: TC
Location: 225468 - 226349 (+)
Gene ID: HRGMv2_4564_3_175
Type: TC
Location: 226349 - 227173 (+)
Type: TC
Location: 226349 - 227173 (+)
Gene ID: HRGMv2_4564_3_176
Type: pfam
Location: 227324 - 228136 (+)
Type: pfam
Location: 227324 - 228136 (+)
Gene ID: HRGMv2_4564_3_177
Type: TC
Location: 228284 - 229243 (-)
Type: TC
Location: 228284 - 229243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.