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Cluster: HRGMv2_4564_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4564_3 HRGMv2_4564_3_139 174750 176525 - GH3
pfam HRGMv2_4564_3 HRGMv2_4564_3_140 176895 177737 + Hydrolase | HAD_2
TC HRGMv2_4564_3 HRGMv2_4564_3_141 177839 179488 - 3.A.1.2.3
TC HRGMv2_4564_3 HRGMv2_4564_3_142 179504 181012 - 3.A.1.2.3
pfam HRGMv2_4564_3 HRGMv2_4564_3_143 181188 182519 - Peripla_BP_4 | Peripla_BP_7
STP HRGMv2_4564_3 HRGMv2_4564_3_144 182709 183680 - Peripla_BP_1
TC HRGMv2_4564_3 HRGMv2_4564_3_145 183667 185373 - 8.A.59.2.1
TF HRGMv2_4564_3 HRGMv2_4564_3_146 185370 186659 - HTH_AraC
pfam HRGMv2_4564_3 HRGMv2_4564_3_147 186684 187670 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4564_3 HRGMv2_4564_3_148 187821 189539 - 3.A.1.106.1
TC HRGMv2_4564_3 HRGMv2_4564_3_149 189526 191133 - 3.A.1.21.2
NULL(UNKNOWN) HRGMv2_4564_3 HRGMv2_4564_3_150 191349 193748 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4564_3 HRGMv2_4564_3_151 194050 194346 + HTH_3
CAZyme HRGMv2_4564_3 HRGMv2_4564_3_152 194378 195175 + GT2
Gene ID: HRGMv2_4564_3_139
Type: CAZyme
Location: 174750 - 176525 (-)
Gene ID: HRGMv2_4564_3_140
Type: pfam
Location: 176895 - 177737 (+)
Gene ID: HRGMv2_4564_3_141
Type: TC
Location: 177839 - 179488 (-)
Gene ID: HRGMv2_4564_3_142
Type: TC
Location: 179504 - 181012 (-)
Gene ID: HRGMv2_4564_3_143
Type: pfam
Location: 181188 - 182519 (-)
Gene ID: HRGMv2_4564_3_144
Type: STP
Location: 182709 - 183680 (-)
Gene ID: HRGMv2_4564_3_145
Type: TC
Location: 183667 - 185373 (-)
Gene ID: HRGMv2_4564_3_146
Type: TF
Location: 185370 - 186659 (-)
Gene ID: HRGMv2_4564_3_147
Type: pfam
Location: 186684 - 187670 (-)
Gene ID: HRGMv2_4564_3_148
Type: TC
Location: 187821 - 189539 (-)
Gene ID: HRGMv2_4564_3_149
Type: TC
Location: 189526 - 191133 (-)
Gene ID: HRGMv2_4564_3_150
Type:
Location: 191349 - 193748 (-)
Gene ID: HRGMv2_4564_3_151
Type: TF
Location: 194050 - 194346 (+)
Gene ID: HRGMv2_4564_3_152
Type: CAZyme
Location: 194378 - 195175 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4564_3_146 vegetarian > omnivore 1.16013 0.02327
HRGMv2_4564_3_147 vegetarian > omnivore 1.10715 0.02711

🧭 Explore Read Mapping of CGC

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