Cluster: HRGMv2_4564_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_417 | 471889 | 473634 | - | CBM34 | GH13_20 |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_418 | 473646 | 474500 | - | 3.A.1.1.44 |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_419 | 474504 | 475376 | - | 3.A.1.1.2 |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_420 | 475452 | 476714 | - | 3.A.1.1.2 |
Gene ID: HRGMv2_4564_2_417
Type: CAZyme
Location: 471889 - 473634 (-)
Type: CAZyme
Location: 471889 - 473634 (-)
Gene ID: HRGMv2_4564_2_418
Type: TC
Location: 473646 - 474500 (-)
Type: TC
Location: 473646 - 474500 (-)
Gene ID: HRGMv2_4564_2_419
Type: TC
Location: 474504 - 475376 (-)
Type: TC
Location: 474504 - 475376 (-)
Gene ID: HRGMv2_4564_2_420
Type: TC
Location: 475452 - 476714 (-)
Type: TC
Location: 475452 - 476714 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4564_2_417 | vegetarian > omnivore | 1.97491 | 0.02711 |
| HRGMv2_4564_2_417 | vegetarian > vegan | 5.38602 | 0.03791 |
| HRGMv2_4564_2_420 | vegetarian > omnivore | 2.24920 | 0.02711 |
| HRGMv2_4564_2_420 | vegetarian > vegan | 4.89684 | 0.01467 |