Cluster: HRGMv2_4564_CGC17
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4564
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_385 | 431093 | 431947 | - | 3.A.1.1.39 |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_386 | 431944 | 432837 | - | 3.A.1.1.15 |
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_387 | 434081 | 435046 | - | GT2 |
| pfam | HRGMv2_4564_2 | HRGMv2_4564_2_388 | 435079 | 437253 | - | DUF7654 | DUF7657 |
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_389 | 437281 | 439539 | - | GT2 |
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_390 | 439555 | 440526 | - | GT2 |
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_391 | 440528 | 441433 | - | GT2 |
| TF | HRGMv2_4564_2 | HRGMv2_4564_2_392 | 441847 | 442311 | + | MarR |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_393 | 442411 | 444186 | + | 3.A.1.135.5 |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_394 | 444176 | 446089 | + | 3.A.1.135.5 |
| pfam | HRGMv2_4564_2 | HRGMv2_4564_2_395 | 446568 | 447176 | + | SRAP |
| NULL(UNKNOWN) | HRGMv2_4564_2 | HRGMv2_4564_2_396 | 447217 | 448881 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_397 | 448865 | 449803 | - | 3.A.1.131.1 |
| NULL(UNKNOWN) | HRGMv2_4564_2 | HRGMv2_4564_2_398 | 449910 | 451118 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_399 | 451115 | 451996 | - | 3.A.1.148.3 |
Gene ID: HRGMv2_4564_2_385
Type: TC
Location: 431093 - 431947 (-)
Type: TC
Location: 431093 - 431947 (-)
Gene ID: HRGMv2_4564_2_386
Type: TC
Location: 431944 - 432837 (-)
Type: TC
Location: 431944 - 432837 (-)
Gene ID: HRGMv2_4564_2_387
Type: CAZyme
Location: 434081 - 435046 (-)
Type: CAZyme
Location: 434081 - 435046 (-)
Gene ID: HRGMv2_4564_2_388
Type: pfam
Location: 435079 - 437253 (-)
Type: pfam
Location: 435079 - 437253 (-)
Gene ID: HRGMv2_4564_2_389
Type: CAZyme
Location: 437281 - 439539 (-)
Type: CAZyme
Location: 437281 - 439539 (-)
Gene ID: HRGMv2_4564_2_390
Type: CAZyme
Location: 439555 - 440526 (-)
Type: CAZyme
Location: 439555 - 440526 (-)
Gene ID: HRGMv2_4564_2_391
Type: CAZyme
Location: 440528 - 441433 (-)
Type: CAZyme
Location: 440528 - 441433 (-)
Gene ID: HRGMv2_4564_2_392
Type: TF
Location: 441847 - 442311 (+)
Type: TF
Location: 441847 - 442311 (+)
Gene ID: HRGMv2_4564_2_393
Type: TC
Location: 442411 - 444186 (+)
Type: TC
Location: 442411 - 444186 (+)
Gene ID: HRGMv2_4564_2_394
Type: TC
Location: 444176 - 446089 (+)
Type: TC
Location: 444176 - 446089 (+)
Gene ID: HRGMv2_4564_2_395
Type: pfam
Location: 446568 - 447176 (+)
Type: pfam
Location: 446568 - 447176 (+)
Gene ID: HRGMv2_4564_2_396
Type:
Location: 447217 - 448881 (-)
Type:
Location: 447217 - 448881 (-)
Gene ID: HRGMv2_4564_2_397
Type: TC
Location: 448865 - 449803 (-)
Type: TC
Location: 448865 - 449803 (-)
Gene ID: HRGMv2_4564_2_398
Type:
Location: 449910 - 451118 (-)
Type:
Location: 449910 - 451118 (-)
Gene ID: HRGMv2_4564_2_399
Type: TC
Location: 451115 - 451996 (-)
Type: TC
Location: 451115 - 451996 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4564_2_397 | vegan > omnivore | 1.18860 | 0.01743 |
| HRGMv2_4564_2_397 | vegetarian > omnivore | 1.31722 | 0.00861 |