Cluster: HRGMv2_4564_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4564
- CGC Family ID: CGCFAM_10300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_347 | 386691 | 390398 | - | 3.A.1.122.13 |
| STP | HRGMv2_4564_2 | HRGMv2_4564_2_348 | 390417 | 391064 | - | TetR_N |
| TC | HRGMv2_4564_2 | HRGMv2_4564_2_349 | 391258 | 392175 | + | 2.A.115.1.5 |
| peptidase | HRGMv2_4564_2 | HRGMv2_4564_2_350 | 392312 | 393709 | - | M18.UPW |
| CAZyme | HRGMv2_4564_2 | HRGMv2_4564_2_351 | 393781 | 394392 | - | GH23 |
Gene ID: HRGMv2_4564_2_347
Type: TC
Location: 386691 - 390398 (-)
Type: TC
Location: 386691 - 390398 (-)
Gene ID: HRGMv2_4564_2_348
Type: STP
Location: 390417 - 391064 (-)
Type: STP
Location: 390417 - 391064 (-)
Gene ID: HRGMv2_4564_2_349
Type: TC
Location: 391258 - 392175 (+)
Type: TC
Location: 391258 - 392175 (+)
Gene ID: HRGMv2_4564_2_350
Type: peptidase
Location: 392312 - 393709 (-)
Type: peptidase
Location: 392312 - 393709 (-)
Gene ID: HRGMv2_4564_2_351
Type: CAZyme
Location: 393781 - 394392 (-)
Type: CAZyme
Location: 393781 - 394392 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.