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Cluster: HRGMv2_4564_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4564_2 HRGMv2_4564_2_191 207500 209530 - GH25
CAZyme HRGMv2_4564_2 HRGMv2_4564_2_192 209866 211551 + GH13_9
pfam HRGMv2_4564_2 HRGMv2_4564_2_193 211781 212341 + Thia_YuaJ
TC HRGMv2_4564_2 HRGMv2_4564_2_194 212994 214469 + 4.A.1.1.7
sulfatase HRGMv2_4564_2 HRGMv2_4564_2_195 214946 215674 + S1_9
CAZyme HRGMv2_4564_2 HRGMv2_4564_2_196 215741 216877 + CE9
pfam HRGMv2_4564_2 HRGMv2_4564_2_197 217055 217309 + IreB
TC HRGMv2_4564_2 HRGMv2_4564_2_198 217781 219730 - 3.A.1.5.41
TC HRGMv2_4564_2 HRGMv2_4564_2_199 219990 221033 - 3.A.1.5.20
TC HRGMv2_4564_2 HRGMv2_4564_2_200 221035 222039 - 3.A.1.5.2
TC HRGMv2_4564_2 HRGMv2_4564_2_201 222050 223147 - 3.A.1.5.2
TC HRGMv2_4564_2 HRGMv2_4564_2_202 223163 224074 - 3.A.1.5.2
TC HRGMv2_4564_2 HRGMv2_4564_2_203 224548 226308 - 3.D.1.5.1
TC HRGMv2_4564_2 HRGMv2_4564_2_204 226302 228137 - 3.D.1.5.1
STP HRGMv2_4564_2 HRGMv2_4564_2_205 228482 231052 + NIR_SIR | NIR_SIR_ferr | Pyr_redox_2
STP HRGMv2_4564_2 HRGMv2_4564_2_206 231235 232194 + Peripla_BP_2
TC HRGMv2_4564_2 HRGMv2_4564_2_207 232157 233179 + 3.A.1.14.16
TC HRGMv2_4564_2 HRGMv2_4564_2_208 233172 233945 + 3.A.1.14.13
Gene ID: HRGMv2_4564_2_191
Type: CAZyme
Location: 207500 - 209530 (-)
Gene ID: HRGMv2_4564_2_192
Type: CAZyme
Location: 209866 - 211551 (+)
Gene ID: HRGMv2_4564_2_193
Type: pfam
Location: 211781 - 212341 (+)
Gene ID: HRGMv2_4564_2_194
Type: TC
Location: 212994 - 214469 (+)
Gene ID: HRGMv2_4564_2_195
Type: sulfatase
Location: 214946 - 215674 (+)
Gene ID: HRGMv2_4564_2_196
Type: CAZyme
Location: 215741 - 216877 (+)
Gene ID: HRGMv2_4564_2_197
Type: pfam
Location: 217055 - 217309 (+)
Gene ID: HRGMv2_4564_2_198
Type: TC
Location: 217781 - 219730 (-)
Gene ID: HRGMv2_4564_2_199
Type: TC
Location: 219990 - 221033 (-)
Gene ID: HRGMv2_4564_2_200
Type: TC
Location: 221035 - 222039 (-)
Gene ID: HRGMv2_4564_2_201
Type: TC
Location: 222050 - 223147 (-)
Gene ID: HRGMv2_4564_2_202
Type: TC
Location: 223163 - 224074 (-)
Gene ID: HRGMv2_4564_2_203
Type: TC
Location: 224548 - 226308 (-)
Gene ID: HRGMv2_4564_2_204
Type: TC
Location: 226302 - 228137 (-)
Gene ID: HRGMv2_4564_2_205
Type: STP
Location: 228482 - 231052 (+)
Gene ID: HRGMv2_4564_2_206
Type: STP
Location: 231235 - 232194 (+)
Gene ID: HRGMv2_4564_2_207
Type: TC
Location: 232157 - 233179 (+)
Gene ID: HRGMv2_4564_2_208
Type: TC
Location: 233172 - 233945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4564_2_203 vegetarian > vegan 1.48718 0.00455
HRGMv2_4564_2_204 vegetarian > vegan 1.53014 0.00455

🧭 Explore Read Mapping of CGC

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