Cluster: HRGMv2_4563_CGC9
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 14
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_6 | HRGMv2_4563_6_10 | 11470 | 12450 | + | 3.A.1.1.10 |
| TC | HRGMv2_4563_6 | HRGMv2_4563_6_11 | 12470 | 13402 | + | 3.A.1.1.10 |
| STP | HRGMv2_4563_6 | HRGMv2_4563_6_12 | 13487 | 15106 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_13 | 15193 | 16278 | + | CE19 |
| pfam | HRGMv2_4563_6 | HRGMv2_4563_6_14 | 16292 | 17206 | + | Amidohydro_2 |
| TF | HRGMv2_4563_6 | HRGMv2_4563_6_15 | 17292 | 18542 | + | HTH_AraC |
| TC | HRGMv2_4563_6 | HRGMv2_4563_6_16 | 18597 | 19979 | - | 2.A.2.3.3 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_17 | 20204 | 22399 | + | GH2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_18 | 22403 | 23755 | + | GH43_24 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_19 | 23768 | 26197 | + | GH3 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_20 | 26212 | 28962 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_21 | 29046 | 29762 | - | CE12 |
| pfam | HRGMv2_4563_6 | HRGMv2_4563_6_22 | 30597 | 31772 | + | Phage_integrase | Phage_int_SAM_3 |
| peptidase | HRGMv2_4563_6 | HRGMv2_4563_6_23 | 32604 | 33344 | + | S09.UPW |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_24 | 33432 | 34493 | - | GT2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_25 | 34490 | 35347 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4563_6 | HRGMv2_4563_6_26 | 35350 | 35691 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_27 | 35756 | 36736 | - | GT2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_28 | 36737 | 37753 | - | GT2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_29 | 37767 | 38759 | - | GT2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_30 | 38756 | 40021 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4563_6 | HRGMv2_4563_6_31 | 40092 | 41312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_32 | 41313 | 42302 | - | GT2 |
| CAZyme | HRGMv2_4563_6 | HRGMv2_4563_6_33 | 42299 | 43414 | - | GT4 |
| pfam | HRGMv2_4563_6 | HRGMv2_4563_6_34 | 43414 | 44286 | - | PPK2 |
| pfam | HRGMv2_4563_6 | HRGMv2_4563_6_35 | 44403 | 44555 | - | FeoB_associated |
| TC | HRGMv2_4563_6 | HRGMv2_4563_6_36 | 44598 | 46970 | - | 9.A.8.1.6 |
Gene ID: HRGMv2_4563_6_10
Type: TC
Location: 11470 - 12450 (+)
Type: TC
Location: 11470 - 12450 (+)
Gene ID: HRGMv2_4563_6_11
Type: TC
Location: 12470 - 13402 (+)
Type: TC
Location: 12470 - 13402 (+)
Gene ID: HRGMv2_4563_6_12
Type: STP
Location: 13487 - 15106 (+)
Type: STP
Location: 13487 - 15106 (+)
Gene ID: HRGMv2_4563_6_13
Type: CAZyme
Location: 15193 - 16278 (+)
Type: CAZyme
Location: 15193 - 16278 (+)
Gene ID: HRGMv2_4563_6_14
Type: pfam
Location: 16292 - 17206 (+)
Type: pfam
Location: 16292 - 17206 (+)
Gene ID: HRGMv2_4563_6_15
Type: TF
Location: 17292 - 18542 (+)
Type: TF
Location: 17292 - 18542 (+)
Gene ID: HRGMv2_4563_6_16
Type: TC
Location: 18597 - 19979 (-)
Type: TC
Location: 18597 - 19979 (-)
Gene ID: HRGMv2_4563_6_17
Type: CAZyme
Location: 20204 - 22399 (+)
Type: CAZyme
Location: 20204 - 22399 (+)
Gene ID: HRGMv2_4563_6_18
Type: CAZyme
Location: 22403 - 23755 (+)
Type: CAZyme
Location: 22403 - 23755 (+)
Gene ID: HRGMv2_4563_6_19
Type: CAZyme
Location: 23768 - 26197 (+)
Type: CAZyme
Location: 23768 - 26197 (+)
Gene ID: HRGMv2_4563_6_20
Type: CAZyme
Location: 26212 - 28962 (+)
Type: CAZyme
Location: 26212 - 28962 (+)
Gene ID: HRGMv2_4563_6_21
Type: CAZyme
Location: 29046 - 29762 (-)
Type: CAZyme
Location: 29046 - 29762 (-)
Gene ID: HRGMv2_4563_6_22
Type: pfam
Location: 30597 - 31772 (+)
Type: pfam
Location: 30597 - 31772 (+)
Gene ID: HRGMv2_4563_6_23
Type: peptidase
Location: 32604 - 33344 (+)
Type: peptidase
Location: 32604 - 33344 (+)
Gene ID: HRGMv2_4563_6_24
Type: CAZyme
Location: 33432 - 34493 (-)
Type: CAZyme
Location: 33432 - 34493 (-)
Gene ID: HRGMv2_4563_6_25
Type: CAZyme
Location: 34490 - 35347 (-)
Type: CAZyme
Location: 34490 - 35347 (-)
Gene ID: HRGMv2_4563_6_26
Type:
Location: 35350 - 35691 (-)
Type:
Location: 35350 - 35691 (-)
Gene ID: HRGMv2_4563_6_27
Type: CAZyme
Location: 35756 - 36736 (-)
Type: CAZyme
Location: 35756 - 36736 (-)
Gene ID: HRGMv2_4563_6_28
Type: CAZyme
Location: 36737 - 37753 (-)
Type: CAZyme
Location: 36737 - 37753 (-)
Gene ID: HRGMv2_4563_6_29
Type: CAZyme
Location: 37767 - 38759 (-)
Type: CAZyme
Location: 37767 - 38759 (-)
Gene ID: HRGMv2_4563_6_30
Type: CAZyme
Location: 38756 - 40021 (-)
Type: CAZyme
Location: 38756 - 40021 (-)
Gene ID: HRGMv2_4563_6_31
Type:
Location: 40092 - 41312 (-)
Type:
Location: 40092 - 41312 (-)
Gene ID: HRGMv2_4563_6_32
Type: CAZyme
Location: 41313 - 42302 (-)
Type: CAZyme
Location: 41313 - 42302 (-)
Gene ID: HRGMv2_4563_6_33
Type: CAZyme
Location: 42299 - 43414 (-)
Type: CAZyme
Location: 42299 - 43414 (-)
Gene ID: HRGMv2_4563_6_34
Type: pfam
Location: 43414 - 44286 (-)
Type: pfam
Location: 43414 - 44286 (-)
Gene ID: HRGMv2_4563_6_35
Type: pfam
Location: 44403 - 44555 (-)
Type: pfam
Location: 44403 - 44555 (-)
Gene ID: HRGMv2_4563_6_36
Type: TC
Location: 44598 - 46970 (-)
Type: TC
Location: 44598 - 46970 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_6_21 | vegan > omnivore | 1.04455 | 0.00778 |