Cluster: HRGMv2_4563_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_03004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_3 | HRGMv2_4563_3_43 | 44527 | 46698 | - | GH36 |
| pfam | HRGMv2_4563_3 | HRGMv2_4563_3_44 | 46695 | 47354 | - | DUF624 |
| CAZyme | HRGMv2_4563_3 | HRGMv2_4563_3_45 | 47553 | 48734 | - | GH130_1 |
| pfam | HRGMv2_4563_3 | HRGMv2_4563_3_46 | 48721 | 49896 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_4563_3 | HRGMv2_4563_3_47 | 50119 | 51138 | - | GH130_2 |
| TC | HRGMv2_4563_3 | HRGMv2_4563_3_48 | 51290 | 52147 | - | 3.A.1.1.47 |
| TC | HRGMv2_4563_3 | HRGMv2_4563_3_49 | 52161 | 53168 | - | 3.A.1.1.20 |
Gene ID: HRGMv2_4563_3_43
Type: CAZyme
Location: 44527 - 46698 (-)
Type: CAZyme
Location: 44527 - 46698 (-)
Gene ID: HRGMv2_4563_3_44
Type: pfam
Location: 46695 - 47354 (-)
Type: pfam
Location: 46695 - 47354 (-)
Gene ID: HRGMv2_4563_3_45
Type: CAZyme
Location: 47553 - 48734 (-)
Type: CAZyme
Location: 47553 - 48734 (-)
Gene ID: HRGMv2_4563_3_46
Type: pfam
Location: 48721 - 49896 (-)
Type: pfam
Location: 48721 - 49896 (-)
Gene ID: HRGMv2_4563_3_47
Type: CAZyme
Location: 50119 - 51138 (-)
Type: CAZyme
Location: 50119 - 51138 (-)
Gene ID: HRGMv2_4563_3_48
Type: TC
Location: 51290 - 52147 (-)
Type: TC
Location: 51290 - 52147 (-)
Gene ID: HRGMv2_4563_3_49
Type: TC
Location: 52161 - 53168 (-)
Type: TC
Location: 52161 - 53168 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_3_47 | vegetarian > vegan | 1.08626 | 0.02695 |