Cluster: HRGMv2_4563_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_69 | 83283 | 84293 | + | 3.A.1.23.5 |
| pfam | HRGMv2_4563_2 | HRGMv2_4563_2_70 | 84268 | 85143 | + | CbiQ |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_71 | 85159 | 85917 | + | 3.A.1.23.3 |
| pfam | HRGMv2_4563_2 | HRGMv2_4563_2_72 | 85967 | 86848 | + | DUF362 |
| TF | HRGMv2_4563_2 | HRGMv2_4563_2_73 | 86915 | 87640 | - | GntR |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_74 | 87986 | 89401 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_75 | 89420 | 91057 | + | GH13_29 |
Gene ID: HRGMv2_4563_2_69
Type: TC
Location: 83283 - 84293 (+)
Type: TC
Location: 83283 - 84293 (+)
Gene ID: HRGMv2_4563_2_70
Type: pfam
Location: 84268 - 85143 (+)
Type: pfam
Location: 84268 - 85143 (+)
Gene ID: HRGMv2_4563_2_71
Type: TC
Location: 85159 - 85917 (+)
Type: TC
Location: 85159 - 85917 (+)
Gene ID: HRGMv2_4563_2_72
Type: pfam
Location: 85967 - 86848 (+)
Type: pfam
Location: 85967 - 86848 (+)
Gene ID: HRGMv2_4563_2_73
Type: TF
Location: 86915 - 87640 (-)
Type: TF
Location: 86915 - 87640 (-)
Gene ID: HRGMv2_4563_2_74
Type: TC
Location: 87986 - 89401 (+)
Type: TC
Location: 87986 - 89401 (+)
Gene ID: HRGMv2_4563_2_75
Type: CAZyme
Location: 89420 - 91057 (+)
Type: CAZyme
Location: 89420 - 91057 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.