Cluster: HRGMv2_4563_CGC4
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_45 | 49834 | 51363 | - | CBM91 | GH43_12 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_46 | 51360 | 53354 | - | GH182 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_47 | 53956 | 55638 | + | CE17 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_48 | 55667 | 57823 | + | GH3 |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_49 | 57851 | 58804 | + | 3.A.1.1.10 |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_50 | 58821 | 59714 | + | 3.A.1.1.29 |
| STP | HRGMv2_4563_2 | HRGMv2_4563_2_51 | 59854 | 61596 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_52 | 61965 | 65411 | + | GH2 |
| pfam | HRGMv2_4563_2 | HRGMv2_4563_2_53 | 65422 | 66540 | + | Aminotran_5 |
| CAZyme | HRGMv2_4563_2 | HRGMv2_4563_2_54 | 66572 | 68530 | + | GH67 |
| TF | HRGMv2_4563_2 | HRGMv2_4563_2_55 | 68591 | 69496 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_56 | 69646 | 70737 | - | 4.A.2.1.20 |
| TF | HRGMv2_4563_2 | HRGMv2_4563_2_57 | 70912 | 71808 | - | HTH_1 |
| pfam | HRGMv2_4563_2 | HRGMv2_4563_2_58 | 71948 | 72724 | + | adh_short | KR | adh_short_C2 |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_59 | 72735 | 73958 | + | 2.A.1.11.3 |
| peptidase | HRGMv2_4563_2 | HRGMv2_4563_2_60 | 74065 | 75603 | - | I87.UPW |
| TC | HRGMv2_4563_2 | HRGMv2_4563_2_61 | 75785 | 76957 | - | 2.A.39.1.3 |
Gene ID: HRGMv2_4563_2_45
Type: CAZyme
Location: 49834 - 51363 (-)
Type: CAZyme
Location: 49834 - 51363 (-)
Gene ID: HRGMv2_4563_2_46
Type: CAZyme
Location: 51360 - 53354 (-)
Type: CAZyme
Location: 51360 - 53354 (-)
Gene ID: HRGMv2_4563_2_47
Type: CAZyme
Location: 53956 - 55638 (+)
Type: CAZyme
Location: 53956 - 55638 (+)
Gene ID: HRGMv2_4563_2_48
Type: CAZyme
Location: 55667 - 57823 (+)
Type: CAZyme
Location: 55667 - 57823 (+)
Gene ID: HRGMv2_4563_2_49
Type: TC
Location: 57851 - 58804 (+)
Type: TC
Location: 57851 - 58804 (+)
Gene ID: HRGMv2_4563_2_50
Type: TC
Location: 58821 - 59714 (+)
Type: TC
Location: 58821 - 59714 (+)
Gene ID: HRGMv2_4563_2_51
Type: STP
Location: 59854 - 61596 (+)
Type: STP
Location: 59854 - 61596 (+)
Gene ID: HRGMv2_4563_2_52
Type: CAZyme
Location: 61965 - 65411 (+)
Type: CAZyme
Location: 61965 - 65411 (+)
Gene ID: HRGMv2_4563_2_53
Type: pfam
Location: 65422 - 66540 (+)
Type: pfam
Location: 65422 - 66540 (+)
Gene ID: HRGMv2_4563_2_54
Type: CAZyme
Location: 66572 - 68530 (+)
Type: CAZyme
Location: 66572 - 68530 (+)
Gene ID: HRGMv2_4563_2_55
Type: TF
Location: 68591 - 69496 (-)
Type: TF
Location: 68591 - 69496 (-)
Gene ID: HRGMv2_4563_2_56
Type: TC
Location: 69646 - 70737 (-)
Type: TC
Location: 69646 - 70737 (-)
Gene ID: HRGMv2_4563_2_57
Type: TF
Location: 70912 - 71808 (-)
Type: TF
Location: 70912 - 71808 (-)
Gene ID: HRGMv2_4563_2_58
Type: pfam
Location: 71948 - 72724 (+)
Type: pfam
Location: 71948 - 72724 (+)
Gene ID: HRGMv2_4563_2_59
Type: TC
Location: 72735 - 73958 (+)
Type: TC
Location: 72735 - 73958 (+)
Gene ID: HRGMv2_4563_2_60
Type: peptidase
Location: 74065 - 75603 (-)
Type: peptidase
Location: 74065 - 75603 (-)
Gene ID: HRGMv2_4563_2_61
Type: TC
Location: 75785 - 76957 (-)
Type: TC
Location: 75785 - 76957 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.