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Cluster: HRGMv2_4563_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4563_1 HRGMv2_4563_1_95 115163 117925 - GH2
CAZyme HRGMv2_4563_1 HRGMv2_4563_1_96 118001 119752 - GH2
CAZyme HRGMv2_4563_1 HRGMv2_4563_1_97 119782 121494 - GH154
CAZyme HRGMv2_4563_1 HRGMv2_4563_1_98 121494 122657 - GH88
TC HRGMv2_4563_1 HRGMv2_4563_1_99 122740 123603 - 3.A.1.1.36
TC HRGMv2_4563_1 HRGMv2_4563_1_100 123622 124539 - 3.A.1.1.20
STP HRGMv2_4563_1 HRGMv2_4563_1_101 124742 126088 - SBP_bac_1
TC HRGMv2_4563_1 HRGMv2_4563_1_102 126443 128248 + 8.A.59.2.1
TF HRGMv2_4563_1 HRGMv2_4563_1_103 128245 129528 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4563_1 HRGMv2_4563_1_104 129497 131311 + PL33_1
Gene ID: HRGMv2_4563_1_95
Type: CAZyme
Location: 115163 - 117925 (-)
Gene ID: HRGMv2_4563_1_96
Type: CAZyme
Location: 118001 - 119752 (-)
Gene ID: HRGMv2_4563_1_97
Type: CAZyme
Location: 119782 - 121494 (-)
Gene ID: HRGMv2_4563_1_98
Type: CAZyme
Location: 121494 - 122657 (-)
Gene ID: HRGMv2_4563_1_99
Type: TC
Location: 122740 - 123603 (-)
Gene ID: HRGMv2_4563_1_100
Type: TC
Location: 123622 - 124539 (-)
Gene ID: HRGMv2_4563_1_101
Type: STP
Location: 124742 - 126088 (-)
Gene ID: HRGMv2_4563_1_102
Type: TC
Location: 126443 - 128248 (+)
Gene ID: HRGMv2_4563_1_103
Type: TF
Location: 128245 - 129528 (+)
Gene ID: HRGMv2_4563_1_104
Type: CAZyme
Location: 129497 - 131311 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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