Cluster: HRGMv2_4563_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_51 | HRGMv2_4563_51_6 | 4376 | 5878 | - | 2.A.50.2.1 |
| pfam | HRGMv2_4563_51 | HRGMv2_4563_51_7 | 5906 | 6265 | - | DUF2304 |
| CAZyme | HRGMv2_4563_51 | HRGMv2_4563_51_8 | 6262 | 6981 | - | GT2 |
| CAZyme | HRGMv2_4563_51 | HRGMv2_4563_51_9 | 7051 | 8268 | - | GT4 |
| pfam | HRGMv2_4563_51 | HRGMv2_4563_51_10 | 8289 | 9464 | - | Epimerase_2 |
| pfam | HRGMv2_4563_51 | HRGMv2_4563_51_11 | 9479 | 10678 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_4563_51 | HRGMv2_4563_51_12 | 10675 | 11733 | - | 9.B.18.2.1 |
Gene ID: HRGMv2_4563_51_6
Type: TC
Location: 4376 - 5878 (-)
Type: TC
Location: 4376 - 5878 (-)
Gene ID: HRGMv2_4563_51_7
Type: pfam
Location: 5906 - 6265 (-)
Type: pfam
Location: 5906 - 6265 (-)
Gene ID: HRGMv2_4563_51_8
Type: CAZyme
Location: 6262 - 6981 (-)
Type: CAZyme
Location: 6262 - 6981 (-)
Gene ID: HRGMv2_4563_51_9
Type: CAZyme
Location: 7051 - 8268 (-)
Type: CAZyme
Location: 7051 - 8268 (-)
Gene ID: HRGMv2_4563_51_10
Type: pfam
Location: 8289 - 9464 (-)
Type: pfam
Location: 8289 - 9464 (-)
Gene ID: HRGMv2_4563_51_11
Type: pfam
Location: 9479 - 10678 (-)
Type: pfam
Location: 9479 - 10678 (-)
Gene ID: HRGMv2_4563_51_12
Type: TC
Location: 10675 - 11733 (-)
Type: TC
Location: 10675 - 11733 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.