Cluster: HRGMv2_4563_CGC23
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_33 | HRGMv2_4563_33_2 | 308 | 1282 | - | CE8 |
| pfam | HRGMv2_4563_33 | HRGMv2_4563_33_3 | 1279 | 2109 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4563_33 | HRGMv2_4563_33_4 | 2122 | 3273 | - | GH105 |
| CAZyme | HRGMv2_4563_33 | HRGMv2_4563_33_5 | 3277 | 4830 | - | GH28 |
| TF | HRGMv2_4563_33 | HRGMv2_4563_33_6 | 4961 | 5824 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4563_33 | HRGMv2_4563_33_7 | 6089 | 6949 | - | 3.A.1.1.11 |
| TC | HRGMv2_4563_33 | HRGMv2_4563_33_8 | 6963 | 7871 | - | 3.A.1.1.11 |
| TC | HRGMv2_4563_33 | HRGMv2_4563_33_9 | 7986 | 9389 | - | 3.A.1.1.11 |
Gene ID: HRGMv2_4563_33_2
Type: CAZyme
Location: 308 - 1282 (-)
Type: CAZyme
Location: 308 - 1282 (-)
Gene ID: HRGMv2_4563_33_3
Type: pfam
Location: 1279 - 2109 (-)
Type: pfam
Location: 1279 - 2109 (-)
Gene ID: HRGMv2_4563_33_4
Type: CAZyme
Location: 2122 - 3273 (-)
Type: CAZyme
Location: 2122 - 3273 (-)
Gene ID: HRGMv2_4563_33_5
Type: CAZyme
Location: 3277 - 4830 (-)
Type: CAZyme
Location: 3277 - 4830 (-)
Gene ID: HRGMv2_4563_33_6
Type: TF
Location: 4961 - 5824 (+)
Type: TF
Location: 4961 - 5824 (+)
Gene ID: HRGMv2_4563_33_7
Type: TC
Location: 6089 - 6949 (-)
Type: TC
Location: 6089 - 6949 (-)
Gene ID: HRGMv2_4563_33_8
Type: TC
Location: 6963 - 7871 (-)
Type: TC
Location: 6963 - 7871 (-)
Gene ID: HRGMv2_4563_33_9
Type: TC
Location: 7986 - 9389 (-)
Type: TC
Location: 7986 - 9389 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.