Cluster: HRGMv2_4563_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_04110
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_29 | HRGMv2_4563_29_2 | 878 | 3097 | - | 2.A.21.9.2 |
| TF | HRGMv2_4563_29 | HRGMv2_4563_29_3 | 3285 | 3746 | - | MerR |
| NULL(UNKNOWN) | HRGMv2_4563_29 | HRGMv2_4563_29_4 | 3861 | 4529 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_29 | HRGMv2_4563_29_5 | 4806 | 5912 | + | CE2 |
| CAZyme | HRGMv2_4563_29 | HRGMv2_4563_29_6 | 5899 | 6978 | + | CBM35inCE17 | CE17 |
Gene ID: HRGMv2_4563_29_2
Type: TC
Location: 878 - 3097 (-)
Type: TC
Location: 878 - 3097 (-)
Gene ID: HRGMv2_4563_29_3
Type: TF
Location: 3285 - 3746 (-)
Type: TF
Location: 3285 - 3746 (-)
Gene ID: HRGMv2_4563_29_4
Type:
Location: 3861 - 4529 (-)
Type:
Location: 3861 - 4529 (-)
Gene ID: HRGMv2_4563_29_5
Type: CAZyme
Location: 4806 - 5912 (+)
Type: CAZyme
Location: 4806 - 5912 (+)
Gene ID: HRGMv2_4563_29_6
Type: CAZyme
Location: 5899 - 6978 (+)
Type: CAZyme
Location: 5899 - 6978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.