Cluster: HRGMv2_4563_CGC2
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 12
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_56 | 66063 | 68066 | - | GH115 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_57 | 68134 | 69183 | - | GH105 |
| pfam | HRGMv2_4563_1 | HRGMv2_4563_1_58 | 69298 | 70149 | - | AP_endonuc_2 |
| NULL(UNKNOWN) | HRGMv2_4563_1 | HRGMv2_4563_1_59 | 70165 | 70866 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_60 | 70983 | 72335 | + | GH28 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_61 | 72427 | 73752 | - | 2.A.66.1.33 |
| pfam | HRGMv2_4563_1 | HRGMv2_4563_1_62 | 73795 | 74052 | - | DUF6171 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_63 | 74049 | 75530 | - | GH51_1 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_64 | 75640 | 77802 | - | GH112 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_65 | 77818 | 79491 | - | CE12 |
| STP | HRGMv2_4563_1 | HRGMv2_4563_1_66 | 79612 | 81279 | - | SBP_bac_1 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_67 | 81344 | 82276 | - | 3.A.1.1.10 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_68 | 82293 | 83246 | - | 3.A.1.1.10 |
| TF | HRGMv2_4563_1 | HRGMv2_4563_1_69 | 83662 | 84594 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_4563_1 | HRGMv2_4563_1_70 | 84709 | 85026 | + | rhaM |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_71 | 85135 | 86454 | - | GH28 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_72 | 86612 | 88300 | - | GH154 |
| TF | HRGMv2_4563_1 | HRGMv2_4563_1_73 | 88293 | 89807 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_74 | 89782 | 91662 | - | 8.A.59.2.1 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_75 | 91814 | 92686 | - | 3.A.1.1.45 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_76 | 92686 | 93573 | - | 3.A.1.1.36 |
| STP | HRGMv2_4563_1 | HRGMv2_4563_1_77 | 93679 | 95055 | - | SBP_bac_1 |
| pfam | HRGMv2_4563_1 | HRGMv2_4563_1_78 | 95405 | 96532 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_79 | 96519 | 97811 | + | GH140 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_80 | 97805 | 98959 | + | GH88 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_81 | 98972 | 101101 | + | GH36 |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_82 | 101104 | 102000 | + | GH43_24 |
Gene ID: HRGMv2_4563_1_56
Type: CAZyme
Location: 66063 - 68066 (-)
Type: CAZyme
Location: 66063 - 68066 (-)
Gene ID: HRGMv2_4563_1_57
Type: CAZyme
Location: 68134 - 69183 (-)
Type: CAZyme
Location: 68134 - 69183 (-)
Gene ID: HRGMv2_4563_1_58
Type: pfam
Location: 69298 - 70149 (-)
Type: pfam
Location: 69298 - 70149 (-)
Gene ID: HRGMv2_4563_1_59
Type:
Location: 70165 - 70866 (-)
Type:
Location: 70165 - 70866 (-)
Gene ID: HRGMv2_4563_1_60
Type: CAZyme
Location: 70983 - 72335 (+)
Type: CAZyme
Location: 70983 - 72335 (+)
Gene ID: HRGMv2_4563_1_61
Type: TC
Location: 72427 - 73752 (-)
Type: TC
Location: 72427 - 73752 (-)
Gene ID: HRGMv2_4563_1_62
Type: pfam
Location: 73795 - 74052 (-)
Type: pfam
Location: 73795 - 74052 (-)
Gene ID: HRGMv2_4563_1_63
Type: CAZyme
Location: 74049 - 75530 (-)
Type: CAZyme
Location: 74049 - 75530 (-)
Gene ID: HRGMv2_4563_1_64
Type: CAZyme
Location: 75640 - 77802 (-)
Type: CAZyme
Location: 75640 - 77802 (-)
Gene ID: HRGMv2_4563_1_65
Type: CAZyme
Location: 77818 - 79491 (-)
Type: CAZyme
Location: 77818 - 79491 (-)
Gene ID: HRGMv2_4563_1_66
Type: STP
Location: 79612 - 81279 (-)
Type: STP
Location: 79612 - 81279 (-)
Gene ID: HRGMv2_4563_1_67
Type: TC
Location: 81344 - 82276 (-)
Type: TC
Location: 81344 - 82276 (-)
Gene ID: HRGMv2_4563_1_68
Type: TC
Location: 82293 - 83246 (-)
Type: TC
Location: 82293 - 83246 (-)
Gene ID: HRGMv2_4563_1_69
Type: TF
Location: 83662 - 84594 (+)
Type: TF
Location: 83662 - 84594 (+)
Gene ID: HRGMv2_4563_1_70
Type: pfam
Location: 84709 - 85026 (+)
Type: pfam
Location: 84709 - 85026 (+)
Gene ID: HRGMv2_4563_1_71
Type: CAZyme
Location: 85135 - 86454 (-)
Type: CAZyme
Location: 85135 - 86454 (-)
Gene ID: HRGMv2_4563_1_72
Type: CAZyme
Location: 86612 - 88300 (-)
Type: CAZyme
Location: 86612 - 88300 (-)
Gene ID: HRGMv2_4563_1_73
Type: TF
Location: 88293 - 89807 (-)
Type: TF
Location: 88293 - 89807 (-)
Gene ID: HRGMv2_4563_1_74
Type: TC
Location: 89782 - 91662 (-)
Type: TC
Location: 89782 - 91662 (-)
Gene ID: HRGMv2_4563_1_75
Type: TC
Location: 91814 - 92686 (-)
Type: TC
Location: 91814 - 92686 (-)
Gene ID: HRGMv2_4563_1_76
Type: TC
Location: 92686 - 93573 (-)
Type: TC
Location: 92686 - 93573 (-)
Gene ID: HRGMv2_4563_1_77
Type: STP
Location: 93679 - 95055 (-)
Type: STP
Location: 93679 - 95055 (-)
Gene ID: HRGMv2_4563_1_78
Type: pfam
Location: 95405 - 96532 (+)
Type: pfam
Location: 95405 - 96532 (+)
Gene ID: HRGMv2_4563_1_79
Type: CAZyme
Location: 96519 - 97811 (+)
Type: CAZyme
Location: 96519 - 97811 (+)
Gene ID: HRGMv2_4563_1_80
Type: CAZyme
Location: 97805 - 98959 (+)
Type: CAZyme
Location: 97805 - 98959 (+)
Gene ID: HRGMv2_4563_1_81
Type: CAZyme
Location: 98972 - 101101 (+)
Type: CAZyme
Location: 98972 - 101101 (+)
Gene ID: HRGMv2_4563_1_82
Type: CAZyme
Location: 101104 - 102000 (+)
Type: CAZyme
Location: 101104 - 102000 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_1_57 | vegan > omnivore | 1.06902 | 0.00778 |
| HRGMv2_4563_1_58 | vegetarian > omnivore | 1.68054 | 0.00629 |
| HRGMv2_4563_1_59 | vegan > omnivore | 1.27769 | 0.00778 |
| HRGMv2_4563_1_59 | vegetarian > omnivore | 1.87961 | 0.00629 |
| HRGMv2_4563_1_60 | vegan > omnivore | 1.23307 | 0.00701 |
| HRGMv2_4563_1_60 | vegetarian > omnivore | 1.37574 | 0.00629 |
| HRGMv2_4563_1_64 | vegan > omnivore | 1.83707 | 0.00778 |
| HRGMv2_4563_1_64 | vegetarian > omnivore | 1.12481 | 0.00629 |
| HRGMv2_4563_1_66 | vegan > omnivore | 1.92495 | 0.00778 |
| HRGMv2_4563_1_66 | vegetarian > omnivore | 1.13712 | 0.00629 |
| HRGMv2_4563_1_67 | vegan > omnivore | 1.86109 | 0.00778 |
| HRGMv2_4563_1_68 | vegan > omnivore | 1.90051 | 0.00778 |
| HRGMv2_4563_1_71 | vegetarian > vegan | 1.61389 | 0.02695 |
| HRGMv2_4563_1_72 | vegetarian > vegan | 1.17712 | 0.02695 |
| HRGMv2_4563_1_73 | vegetarian > vegan | 1.85153 | 0.02695 |
| HRGMv2_4563_1_74 | vegetarian > vegan | 1.30443 | 0.02695 |
| HRGMv2_4563_1_75 | vegetarian > vegan | 1.64821 | 0.02695 |
| HRGMv2_4563_1_76 | vegetarian > vegan | 2.33141 | 0.02695 |
| HRGMv2_4563_1_77 | vegetarian > vegan | 1.51236 | 0.02695 |
| HRGMv2_4563_1_80 | vegetarian > vegan | 1.68995 | 0.02695 |
| HRGMv2_4563_1_81 | vegetarian > vegan | 1.97557 | 0.02695 |