Cluster: HRGMv2_4563_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_06663
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_25 | HRGMv2_4563_25_1 | 2 | 1066 | - | GH2 |
| TC | HRGMv2_4563_25 | HRGMv2_4563_25_2 | 1140 | 2624 | - | 2.A.2.3.6 |
| CAZyme | HRGMv2_4563_25 | HRGMv2_4563_25_3 | 3107 | 4405 | + | GH1 |
| TF | HRGMv2_4563_25 | HRGMv2_4563_25_4 | 4471 | 5670 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4563_25 | HRGMv2_4563_25_5 | 5722 | 8142 | - | GH3 |
Gene ID: HRGMv2_4563_25_1
Type: CAZyme
Location: 2 - 1066 (-)
Type: CAZyme
Location: 2 - 1066 (-)
Gene ID: HRGMv2_4563_25_2
Type: TC
Location: 1140 - 2624 (-)
Type: TC
Location: 1140 - 2624 (-)
Gene ID: HRGMv2_4563_25_3
Type: CAZyme
Location: 3107 - 4405 (+)
Type: CAZyme
Location: 3107 - 4405 (+)
Gene ID: HRGMv2_4563_25_4
Type: TF
Location: 4471 - 5670 (+)
Type: TF
Location: 4471 - 5670 (+)
Gene ID: HRGMv2_4563_25_5
Type: CAZyme
Location: 5722 - 8142 (-)
Type: CAZyme
Location: 5722 - 8142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_25_4 | vegan > omnivore | 1.09341 | 0.00778 |