Cluster: HRGMv2_4563_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_24 | HRGMv2_4563_24_11 | 12519 | 13424 | - | 3.A.1.1.10 |
| TC | HRGMv2_4563_24 | HRGMv2_4563_24_12 | 13438 | 14415 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_4563_24 | HRGMv2_4563_24_13 | 14412 | 15446 | - | GH179 |
| TF | HRGMv2_4563_24 | HRGMv2_4563_24_14 | 15433 | 17784 | - | HTH_AraC |
| CAZyme | HRGMv2_4563_24 | HRGMv2_4563_24_15 | 17832 | 18956 | - | GH177 |
| pfam | HRGMv2_4563_24 | HRGMv2_4563_24_16 | 18949 | 19728 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4563_24 | HRGMv2_4563_24_17 | 19746 | 21761 | - | PL12 |
| TC | HRGMv2_4563_24 | HRGMv2_4563_24_18 | 21866 | 23542 | - | 3.A.1.1.29 |
Gene ID: HRGMv2_4563_24_11
Type: TC
Location: 12519 - 13424 (-)
Type: TC
Location: 12519 - 13424 (-)
Gene ID: HRGMv2_4563_24_12
Type: TC
Location: 13438 - 14415 (-)
Type: TC
Location: 13438 - 14415 (-)
Gene ID: HRGMv2_4563_24_13
Type: CAZyme
Location: 14412 - 15446 (-)
Type: CAZyme
Location: 14412 - 15446 (-)
Gene ID: HRGMv2_4563_24_14
Type: TF
Location: 15433 - 17784 (-)
Type: TF
Location: 15433 - 17784 (-)
Gene ID: HRGMv2_4563_24_15
Type: CAZyme
Location: 17832 - 18956 (-)
Type: CAZyme
Location: 17832 - 18956 (-)
Gene ID: HRGMv2_4563_24_16
Type: pfam
Location: 18949 - 19728 (-)
Type: pfam
Location: 18949 - 19728 (-)
Gene ID: HRGMv2_4563_24_17
Type: CAZyme
Location: 19746 - 21761 (-)
Type: CAZyme
Location: 19746 - 21761 (-)
Gene ID: HRGMv2_4563_24_18
Type: TC
Location: 21866 - 23542 (-)
Type: TC
Location: 21866 - 23542 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_24_11 | vegan > omnivore | 2.07206 | 0.00778 |
| HRGMv2_4563_24_11 | vegetarian > omnivore | 1.82883 | 0.00629 |
| HRGMv2_4563_24_12 | vegan > omnivore | 2.31357 | 0.00778 |
| HRGMv2_4563_24_12 | vegetarian > omnivore | 1.90667 | 0.00629 |
| HRGMv2_4563_24_13 | vegan > omnivore | 1.96750 | 0.00778 |
| HRGMv2_4563_24_13 | vegetarian > omnivore | 1.36696 | 0.00629 |
| HRGMv2_4563_24_15 | vegan > omnivore | 1.78666 | 0.00778 |
| HRGMv2_4563_24_15 | vegetarian > omnivore | 1.43796 | 0.00629 |
| HRGMv2_4563_24_16 | vegan > omnivore | 2.51316 | 0.00778 |
| HRGMv2_4563_24_16 | vegetarian > omnivore | 2.00302 | 0.00629 |
| HRGMv2_4563_24_17 | vegan > omnivore | 1.88300 | 0.00778 |
| HRGMv2_4563_24_17 | vegetarian > omnivore | 1.72169 | 0.00629 |
| HRGMv2_4563_24_18 | vegan > omnivore | 1.65430 | 0.00778 |
| HRGMv2_4563_24_18 | vegetarian > omnivore | 1.45131 | 0.00629 |