Cluster: HRGMv2_4563_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_00113
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_22 | HRGMv2_4563_22_20 | 14899 | 16638 | + | 3.A.1.210.9 |
| TC | HRGMv2_4563_22 | HRGMv2_4563_22_21 | 16625 | 18262 | + | 3.A.1.135.6 |
| pfam | HRGMv2_4563_22 | HRGMv2_4563_22_22 | 18384 | 19037 | - | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_4563_22 | HRGMv2_4563_22_23 | 19048 | 20067 | - | GT2 |
Gene ID: HRGMv2_4563_22_20
Type: TC
Location: 14899 - 16638 (+)
Type: TC
Location: 14899 - 16638 (+)
Gene ID: HRGMv2_4563_22_21
Type: TC
Location: 16625 - 18262 (+)
Type: TC
Location: 16625 - 18262 (+)
Gene ID: HRGMv2_4563_22_22
Type: pfam
Location: 18384 - 19037 (-)
Type: pfam
Location: 18384 - 19037 (-)
Gene ID: HRGMv2_4563_22_23
Type: CAZyme
Location: 19048 - 20067 (-)
Type: CAZyme
Location: 19048 - 20067 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.