Cluster: HRGMv2_4563_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_00950
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_14 | HRGMv2_4563_14_13 | 12859 | 13599 | + | 8.A.3.1.2 |
| pfam | HRGMv2_4563_14 | HRGMv2_4563_14_14 | 13596 | 14351 | + | CpsB_CapC |
| TF | HRGMv2_4563_14 | HRGMv2_4563_14_15 | 14626 | 15210 | + | HTH_3 |
| CAZyme | HRGMv2_4563_14 | HRGMv2_4563_14_16 | 15327 | 16172 | - | GT2 |
Gene ID: HRGMv2_4563_14_13
Type: TC
Location: 12859 - 13599 (+)
Type: TC
Location: 12859 - 13599 (+)
Gene ID: HRGMv2_4563_14_14
Type: pfam
Location: 13596 - 14351 (+)
Type: pfam
Location: 13596 - 14351 (+)
Gene ID: HRGMv2_4563_14_15
Type: TF
Location: 14626 - 15210 (+)
Type: TF
Location: 14626 - 15210 (+)
Gene ID: HRGMv2_4563_14_16
Type: CAZyme
Location: 15327 - 16172 (-)
Type: CAZyme
Location: 15327 - 16172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.